Detailed information NTG0036158

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: BSNT_RS13345
• Genome accession: NC_017196
• Coordinates: 2461596..2462723 (-)
• Length: 375 a.a.
• NCBI ID: WP_014480328.1
• Uniprot ID: -
• Organism: Bacillus subtilis subsp. natto BEST195
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2456596..2467723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSNT_RS23365	-	2456643..2456855 (-)	213	Protein_2560	recombinase family protein	-
BSNT_RS13330 (BSNT_03835)	fumC	2457074..2458462 (-)	1389	WP_014480325.1	class II fumarate hydratase	-
BSNT_RS13335 (BSNT_03836)	-	2458629..2459519 (+)	891	WP_014480326.1	LysR family transcriptional regulator	-
BSNT_RS13340 (BSNT_03837)	-	2460461..2460856 (+)	396	WP_014480327.1	VOC family protein	-
BSNT_RS13345 (BSNT_03838)	rapC	2461596..2462723 (-)	1128	WP_014480328.1	Rap family tetratricopeptide repeat protein	Regulator
BSNT_RS23550	-	2462905..2464831 (+)	1927	Protein_2565	T7SS effector LXG polymorphic toxin	-
BSNT_RS13360 (BSNT_03842)	-	2464845..2465132 (+)	288	WP_014480331.1	hypothetical protein	-
BSNT_RS13365 (BSNT_03843)	-	2465535..2465975 (+)	441	WP_014480332.1	SMI1/KNR4 family protein	-
BSNT_RS13370	-	2466074..2466526 (+)	453	WP_014480333.1	SMI1/KNR4 family protein	-
BSNT_RS13375 (BSNT_03845)	cdiI	2466623..2466982 (+)	360	WP_014480334.1	ribonuclease toxin immunity protein CdiI	-
BSNT_RS13380	-	2467087..2467566 (+)	480	WP_224588637.1	hypothetical protein	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44149.36 Da
• Isoelectric Point: 6.0289

>NTDB_id=36158 BSNT_RS13345 WP_014480328.1 2461596..2462723(-) (rapC) [Bacillus subtilis subsp. natto BEST195]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLNALYVDAVDQQGVNKTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=36158 BSNT_RS13345 WP_014480328.1 2461596..2462723(-) (rapC) [Bacillus subtilis subsp. natto BEST195]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCTTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACGACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCGTTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAATGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATAAAACCATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (195-251)

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.418	100	0.397