Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   E8N02_RS03555 Genome accession   NZ_CP040015
Coordinates   669629..670066 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni subsp. jejuni strain LDG17f     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 664629..675066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8N02_RS03535 (E8N02_03570) kdpD 665121..666941 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  E8N02_RS03540 (E8N02_03575) uvrB 667043..669016 (-) 1974 WP_032584670.1 excinuclease ABC subunit UvrB -
  E8N02_RS03545 (E8N02_03580) - 669170..669400 (+) 231 WP_002852327.1 hypothetical protein -
  E8N02_RS03550 (E8N02_03585) - 669390..669632 (+) 243 WP_002854947.1 hypothetical protein -
  E8N02_RS03555 (E8N02_03590) Cj0683 669629..670066 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  E8N02_RS03560 (E8N02_03595) priA 670048..671901 (+) 1854 WP_074484734.1 primosomal protein N' -
  E8N02_RS03565 (E8N02_03600) cipA 671911..673305 (-) 1395 WP_052775717.1 DUF2972 domain-containing protein -
  E8N02_RS03570 (E8N02_03605) ispG 673451..674524 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=361579 E8N02_RS03555 WP_002852324.1 669629..670066(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain LDG17f]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=361579 E8N02_RS03555 WP_002852324.1 669629..670066(+) (Cj0683) [Campylobacter jejuni subsp. jejuni strain LDG17f]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAATGCTAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AATGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1

Multiple sequence alignment