Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BPOF4_RS18650 Genome accession   NC_013791
Coordinates   3750841..3751794 (-) Length   317 a.a.
NCBI ID   WP_012960813.1    Uniprot ID   -
Organism   Alkalihalophilus pseudofirmus OF4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3745841..3756794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPOF4_RS18625 (BpOF4_07385) - 3746090..3746545 (-) 456 WP_012960808.1 DinB family protein -
  BPOF4_RS18630 (BpOF4_07390) - 3746624..3747502 (-) 879 WP_012960809.1 NAD(P)-dependent oxidoreductase -
  BPOF4_RS18635 (BpOF4_07395) - 3748031..3749065 (-) 1035 WP_012960810.1 siderophore ABC transporter substrate-binding protein -
  BPOF4_RS18640 (BpOF4_07400) - 3749152..3749910 (-) 759 WP_012960811.1 ABC transporter ATP-binding protein -
  BPOF4_RS18645 (BpOF4_07405) - 3749904..3750851 (-) 948 WP_012960812.1 iron chelate uptake ABC transporter family permease subunit -
  BPOF4_RS18650 (BpOF4_07410) ceuB 3750841..3751794 (-) 954 WP_012960813.1 ABC transporter permease Machinery gene
  BPOF4_RS18655 (BpOF4_07415) - 3751999..3753507 (-) 1509 WP_012960814.1 DEAD/DEAH box helicase -
  BPOF4_RS18660 (BpOF4_07420) - 3753892..3755553 (-) 1662 WP_012960815.1 glycoside hydrolase family 13 protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35009.41 Da        Isoelectric Point: 10.2034

>NTDB_id=36157 BPOF4_RS18650 WP_012960813.1 3750841..3751794(-) (ceuB) [Alkalihalophilus pseudofirmus OF4]
MKIKYLVLLFILLSFGSLFVGVSDISPLEIFNMTDEQKHIFLTSRIPRLISIIIAGVGMSICGLIMQQLTRNKFVSPTTA
GTLDSARLGILVSMILFASASPLQKMIVAFLFALAGTFIFMKILERIKIKNTIFIPLVGLMFGNIVGSVTTFFAYRYDLI
QNMSSWLQGNFAVIIRGRYELLYISIPLLIVAYIFANRFTIAGMGEEFSKNLGLKYKQVVNIGLVIVAAITAVVVLTVGM
IPFLGLIIPNIVTIYKGDNLRENLPHTALLGAVFVLFCDILGRIIIYPYEIPIGLTVGVIGSGIFLYLLLGRKKHGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=36157 BPOF4_RS18650 WP_012960813.1 3750841..3751794(-) (ceuB) [Alkalihalophilus pseudofirmus OF4]
ATGAAGATTAAATACTTAGTACTTTTATTTATCTTATTGTCATTTGGTTCCTTATTTGTAGGAGTATCTGATATTTCGCC
TTTAGAAATATTCAATATGACAGACGAGCAGAAACATATTTTCTTAACGAGCCGGATTCCGCGTCTGATCAGTATTATCA
TCGCAGGCGTTGGGATGAGTATTTGCGGATTAATTATGCAGCAGCTGACAAGAAATAAGTTTGTTTCACCGACCACCGCA
GGAACACTTGATTCAGCAAGACTGGGTATTTTAGTGAGCATGATCTTATTTGCTTCAGCAAGCCCGCTGCAAAAGATGAT
TGTTGCTTTTTTATTTGCGCTGGCAGGAACGTTCATTTTTATGAAAATCCTTGAGCGGATCAAAATTAAAAATACAATCT
TCATTCCTCTTGTCGGCTTAATGTTTGGAAACATCGTCGGATCGGTGACCACCTTTTTTGCTTACCGTTATGACTTAATT
CAGAACATGTCATCCTGGCTGCAAGGGAATTTTGCGGTCATTATCCGCGGTCGTTATGAATTGCTCTATATCAGTATTCC
TTTATTGATTGTCGCGTACATATTTGCTAACAGATTTACGATTGCTGGAATGGGTGAGGAATTTTCAAAGAACCTAGGCT
TGAAGTATAAGCAAGTAGTTAATATCGGCCTGGTAATTGTCGCTGCCATTACTGCAGTTGTTGTTTTAACTGTAGGAATG
ATTCCATTTTTAGGGCTGATCATTCCAAACATTGTAACGATTTATAAAGGAGATAATTTAAGAGAGAACCTGCCGCACAC
GGCGCTTCTAGGAGCTGTATTTGTACTGTTTTGTGACATTCTTGGGCGTATTATTATTTATCCGTACGAGATTCCAATAG
GATTAACTGTCGGTGTGATTGGAAGCGGAATCTTTCTTTATCTTCTACTCGGGAGAAAAAAACATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.449

98.423

0.546

Multiple sequence alignment