Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   E1E63_RS07720 Genome accession   NZ_CP039992
Coordinates   1572211..1572657 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Lr3     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1567211..1577657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1E63_RS07690 (E1E63_07690) gcvPA 1568137..1569483 (-) 1347 WP_000019683.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  E1E63_RS07695 (E1E63_07695) gcvT 1569503..1570594 (-) 1092 WP_000093346.1 glycine cleavage system aminomethyltransferase GcvT -
  E1E63_RS07700 (E1E63_07700) - 1570753..1571277 (-) 525 WP_001015121.1 shikimate kinase -
  E1E63_RS07705 (E1E63_07705) - 1571267..1571413 (-) 147 WP_001789879.1 hypothetical protein -
  E1E63_RS07710 (E1E63_07710) comGF 1571510..1572007 (-) 498 WP_001829055.1 competence type IV pilus minor pilin ComGF Machinery gene
  E1E63_RS07715 (E1E63_07715) comGE 1571925..1572224 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  E1E63_RS07720 (E1E63_07720) comGD 1572211..1572657 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  E1E63_RS07725 (E1E63_07725) comGC 1572635..1572946 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  E1E63_RS07730 (E1E63_07730) comGB 1572960..1574030 (-) 1071 WP_000776406.1 competence type IV pilus assembly protein ComGB Machinery gene
  E1E63_RS07735 (E1E63_07735) comGA 1574002..1574976 (-) 975 WP_000697227.1 competence type IV pilus ATPase ComGA Machinery gene
  E1E63_RS07740 (E1E63_07740) - 1575028..1575651 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  E1E63_RS07745 (E1E63_07745) - 1575648..1575977 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  E1E63_RS07750 (E1E63_07750) - 1575977..1576963 (-) 987 WP_000161314.1 ROK family glucokinase -
  E1E63_RS07755 (E1E63_07755) - 1576960..1577163 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=361478 E1E63_RS07720 WP_001788899.1 1572211..1572657(-) (comGD) [Staphylococcus aureus strain Lr3]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=361478 E1E63_RS07720 WP_001788899.1 1572211..1572657(-) (comGD) [Staphylococcus aureus strain Lr3]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment