Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BPOF4_RS13450 Genome accession   NC_013791
Coordinates   2637572..2639374 (-) Length   600 a.a.
NCBI ID   WP_012959723.1    Uniprot ID   D3FV19
Organism   Alkalihalophilus pseudofirmus OF4     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2632572..2644374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPOF4_RS21235 (BpOF4_01870) - 2632729..2633439 (+) 711 WP_012959719.1 lytic transglycosylase domain-containing protein -
  BPOF4_RS13435 (BpOF4_01875) - 2633478..2635517 (-) 2040 WP_012959720.1 molybdopterin-dependent oxidoreductase -
  BPOF4_RS13440 (BpOF4_01880) - 2635753..2636127 (+) 375 WP_012959721.1 globin family protein -
  BPOF4_RS13445 (BpOF4_01885) - 2636171..2637088 (+) 918 WP_012959722.1 ClpXP adapter SpxH family protein -
  BPOF4_RS13450 (BpOF4_01890) pepF 2637572..2639374 (-) 1803 WP_012959723.1 oligoendopeptidase F Regulator
  BPOF4_RS13455 (BpOF4_01895) - 2639475..2640677 (-) 1203 WP_012959724.1 competence protein CoiA -
  BPOF4_RS13460 (BpOF4_01900) cls 2640834..2642345 (-) 1512 WP_012959725.1 cardiolipin synthase -
  BPOF4_RS13465 (BpOF4_01905) mecA 2642453..2643106 (-) 654 WP_012959726.1 adaptor protein MecA -
  BPOF4_RS13470 (BpOF4_01910) - 2643568..2644236 (+) 669 WP_012959727.1 TerC family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69268.03 Da        Isoelectric Point: 4.7568

>NTDB_id=36143 BPOF4_RS13450 WP_012959723.1 2637572..2639374(-) (pepF) [Alkalihalophilus pseudofirmus OF4]
MAKQRLKRTEVPEASKWDLEAIFATDKEWEEEFSAVKSLYPQMTAYKGKLGESADSLYEALQKQDEISERLNRLYTYAHM
RNDEDTTNSLYQGLHDRAMSLSAQVAQSVAYLTPELLELDEKIIKQFINEHEGLNRYEHMLEELYKEKPHVLSEAEEAIL
AQASEALQSPGQTFGMLNNADLTFPTIKDEDGEDVEITHGRFISLLESKDRKVRENAFKAVYNTYGQFKNTFAQTLSGQV
KKDLFFANVRKYRSAREAALSQNHIPEVVYDQLVETINKNIHLLHRYVKLRKKVLGVEELHMYDLYTPLVEGSKVKVSYE
EAKDLVIQGVEPLGEEYVNVLKEGFTKRWVDVEETVGKRSGAYSSGAYGTMPYILMNWQDNIDNLFTLAHEFGHSMHSYY
TRKHQPYVYGDYTIFVAEVASTLNESLLNDYLVKTTTDKQQKLYLLNHFLEGFRGTVFRQTMFAEFEQKIHELSADGEAL
TPELLTTTYYELNKKYFGEEMVVDEEIGLEWARIPHFYYNFYVYQYATGYSAAAALSKQILEEGEPAVDRYLSFLKAGSS
NFPIEVLKEAGVDMTSKEPIEEALRLFEETLDEMERLLKA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=36143 BPOF4_RS13450 WP_012959723.1 2637572..2639374(-) (pepF) [Alkalihalophilus pseudofirmus OF4]
TTGGCTAAACAACGTTTAAAAAGAACTGAGGTACCTGAAGCTTCAAAATGGGACCTAGAAGCTATTTTTGCGACAGATAA
AGAGTGGGAAGAAGAGTTTTCTGCTGTAAAATCTCTTTACCCGCAAATGACCGCATATAAAGGGAAACTAGGAGAATCAG
CTGACAGTCTATACGAAGCACTTCAAAAGCAAGATGAGATCAGCGAGCGCTTAAACAGACTATATACTTATGCTCATATG
CGCAATGATGAAGATACAACAAATTCACTCTATCAAGGGCTGCATGACAGAGCAATGAGCCTAAGTGCACAAGTTGCACA
ATCTGTAGCATATTTAACTCCTGAACTGCTAGAGCTTGATGAGAAAATAATCAAGCAATTTATTAATGAACACGAGGGAT
TAAACAGATATGAGCACATGTTGGAAGAATTATATAAAGAAAAGCCGCATGTGTTATCTGAAGCAGAAGAGGCAATCTTA
GCTCAAGCGAGTGAAGCGCTTCAAAGTCCTGGGCAGACGTTTGGTATGTTAAACAATGCAGACTTAACATTTCCGACAAT
AAAGGATGAAGATGGTGAAGATGTAGAGATTACTCATGGCAGATTTATATCTTTACTTGAGTCAAAAGACCGTAAAGTGA
GAGAAAATGCATTTAAAGCCGTTTATAATACATATGGGCAGTTTAAAAATACCTTTGCTCAAACATTGAGCGGCCAAGTG
AAAAAAGATTTATTCTTTGCAAATGTACGGAAGTACCGCTCGGCTAGGGAGGCAGCATTAAGTCAAAATCATATCCCAGA
GGTGGTATATGACCAGTTAGTAGAAACGATTAATAAAAATATTCACTTGCTGCATCGATATGTGAAGCTGCGCAAAAAAG
TACTAGGCGTTGAAGAGCTGCATATGTATGACTTGTATACGCCGTTAGTAGAAGGCAGCAAGGTCAAAGTTTCTTATGAA
GAGGCTAAAGATCTTGTAATCCAAGGGGTCGAGCCGCTTGGAGAAGAATACGTGAACGTCTTAAAAGAAGGTTTTACTAA
ACGCTGGGTCGACGTAGAAGAAACGGTTGGTAAGCGCAGCGGGGCTTATTCTTCAGGTGCTTACGGAACGATGCCCTACA
TTTTAATGAACTGGCAGGATAACATCGATAACTTATTTACATTAGCTCATGAATTTGGCCATAGTATGCACAGCTACTAT
ACTCGTAAGCATCAGCCTTATGTCTATGGGGATTACACTATTTTTGTCGCTGAAGTTGCTTCGACGTTAAATGAATCATT
ATTAAATGATTACTTAGTTAAAACGACAACAGATAAACAACAAAAACTGTACCTGTTAAATCATTTTCTAGAAGGATTTA
GAGGGACAGTGTTCAGGCAGACAATGTTTGCTGAGTTTGAGCAAAAAATTCATGAACTGTCTGCTGACGGGGAGGCTTTG
ACCCCTGAATTGTTAACAACAACCTATTATGAATTAAACAAGAAATATTTCGGTGAAGAAATGGTTGTAGATGAAGAGAT
TGGTTTAGAATGGGCACGTATCCCTCATTTCTATTACAATTTCTATGTCTATCAGTATGCAACGGGCTACAGTGCTGCAG
CAGCTCTTTCAAAGCAGATATTAGAAGAAGGGGAGCCAGCGGTTGATCGTTACTTATCCTTCTTAAAAGCAGGGAGCTCT
AATTTCCCAATCGAGGTGCTGAAGGAAGCTGGTGTAGACATGACGTCTAAAGAGCCAATTGAAGAAGCGCTCCGTTTATT
TGAAGAAACACTTGATGAAATGGAACGTTTATTAAAAGCATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(205-585)

Oligopeptidase F (Peptidase_M3_N)

(115-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3FV19

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.986

98.667

0.483

Multiple sequence alignment