Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BPOF4_RS11365 Genome accession   NC_013791
Coordinates   2249241..2250491 (-) Length   416 a.a.
NCBI ID   WP_012959319.1    Uniprot ID   -
Organism   Alkalihalophilus pseudofirmus OF4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2244241..2255491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPOF4_RS11350 (BpOF4_19575) - 2245209..2246201 (-) 993 WP_012959316.1 metallophosphoesterase family protein -
  BPOF4_RS11355 (BpOF4_19580) recA 2246340..2247389 (-) 1050 WP_012959317.1 recombinase RecA Machinery gene
  BPOF4_RS11360 (BpOF4_19585) - 2247622..2249241 (-) 1620 WP_012959318.1 DEAD/DEAH box helicase -
  BPOF4_RS11365 (BpOF4_19590) cinA 2249241..2250491 (-) 1251 WP_012959319.1 competence/damage-inducible protein A Machinery gene
  BPOF4_RS11370 (BpOF4_19595) pgsA 2250505..2251083 (-) 579 WP_012959320.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BPOF4_RS11375 (BpOF4_19600) - 2251119..2251613 (-) 495 WP_012959321.1 YajQ family cyclic di-GMP-binding protein -
  BPOF4_RS11380 (BpOF4_19605) - 2251819..2252721 (-) 903 WP_012959322.1 helix-turn-helix domain-containing protein -
  BPOF4_RS11385 (BpOF4_19610) - 2252743..2253510 (-) 768 WP_012959323.1 DUF3388 domain-containing protein -
  BPOF4_RS11390 (BpOF4_19615) - 2253796..2254047 (-) 252 WP_012959324.1 DUF3243 domain-containing protein -
  BPOF4_RS11395 (BpOF4_19620) ymfI 2254121..2254843 (-) 723 WP_012959325.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45489.31 Da        Isoelectric Point: 6.0175

>NTDB_id=36139 BPOF4_RS11365 WP_012959319.1 2249241..2250491(-) (cinA) [Alkalihalophilus pseudofirmus OF4]
MKAEIIAVGSELLLGQIVNSNAAFLSVELAQHGIDVFYHVVVGDNEERLTDVLNQASKRSDLVILTGGLGPTKDDLTKET
VAEICGKDLVYHQQSLDAITSFFEKRGQVMTENNKKQALVIEDSHVLVNHNGMAPGMVLETDQCKFVLLPGPPKEMQPMV
VSELRPLLEKDNVTQEKITSRVLRFFGIGESKLAAMIDDLLVNQTNPTIAPLASEGEVTLRLTVKHYDPNVSVQLLDQVE
KAILSRVGEYFYGYGETTLMEVVSKQLKKHKYYIAAAESLTGGLFSSALTSISGASEIFHGSIISYATKVKENHLGVPNK
IIAENGVVSAECALEMAKAVKLKLQSDIGISFTGVAGPGTQDGKKPGEVYIGICGPNNEMAVHKLKLSGNREAIRQRTIN
YGCFYLLNELKRWNIE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=36139 BPOF4_RS11365 WP_012959319.1 2249241..2250491(-) (cinA) [Alkalihalophilus pseudofirmus OF4]
ATGAAAGCGGAAATTATAGCCGTTGGTTCCGAATTATTACTTGGCCAGATCGTGAACTCAAATGCTGCTTTCTTATCCGT
GGAACTAGCTCAGCATGGAATTGATGTATTTTATCATGTTGTGGTTGGTGATAACGAAGAACGGTTGACTGACGTTCTCA
ACCAAGCTTCTAAGAGATCTGATTTGGTTATATTAACTGGCGGGCTAGGTCCCACTAAAGATGACTTAACGAAAGAAACC
GTTGCTGAGATCTGCGGGAAAGATCTTGTGTATCACCAACAATCGTTAGATGCTATTACTTCTTTCTTTGAAAAAAGAGG
GCAGGTCATGACGGAAAATAACAAAAAACAGGCGCTTGTCATTGAAGACAGCCATGTATTGGTTAATCATAATGGAATGG
CGCCTGGAATGGTTTTGGAGACCGATCAATGTAAGTTTGTGTTGCTTCCCGGCCCTCCAAAAGAAATGCAGCCAATGGTG
GTGTCTGAATTAAGACCGCTGCTTGAGAAAGACAATGTGACACAGGAGAAAATTACATCCCGAGTCCTCAGGTTTTTTGG
GATAGGCGAATCCAAATTAGCAGCAATGATTGATGATTTGCTTGTCAACCAAACCAACCCTACGATTGCACCGCTTGCTA
GCGAGGGTGAGGTTACTTTGCGGCTGACAGTCAAACATTATGACCCAAACGTAAGTGTCCAGCTCCTTGATCAAGTAGAA
AAAGCCATCCTTTCTCGTGTCGGAGAATATTTTTATGGGTACGGTGAGACAACGTTAATGGAAGTCGTATCTAAGCAGCT
TAAAAAACATAAGTACTATATTGCGGCTGCTGAAAGCTTAACGGGAGGCCTTTTCTCAAGTGCACTTACATCCATTTCAG
GAGCCTCTGAGATTTTTCATGGAAGTATTATTTCTTACGCAACAAAAGTGAAGGAAAATCATTTAGGTGTACCGAATAAA
ATTATTGCTGAAAACGGAGTGGTAAGTGCAGAATGTGCCTTGGAAATGGCTAAAGCTGTTAAACTGAAGCTTCAATCAGA
TATTGGGATCAGTTTCACAGGCGTTGCTGGACCTGGTACACAAGATGGTAAAAAGCCTGGAGAAGTTTATATCGGAATAT
GCGGCCCGAACAATGAGATGGCCGTACATAAGTTAAAACTAAGCGGCAACAGAGAAGCCATTCGTCAGAGGACGATAAAC
TATGGTTGTTTTTATTTGTTGAACGAACTGAAAAGGTGGAATATAGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

54.015

98.798

0.534
  cinA Streptococcus mutans UA159

47.619

95.913

0.457
  cinA Streptococcus mitis SK321

49.347

92.067

0.454
  cinA Streptococcus pneumoniae TIGR4

48.825

92.067

0.45
  cinA Streptococcus mitis NCTC 12261

48.825

92.067

0.45
  cinA Streptococcus pneumoniae Rx1

48.564

92.067

0.447
  cinA Streptococcus pneumoniae R6

48.564

92.067

0.447
  cinA Streptococcus pneumoniae D39

48.303

92.067

0.445
  cinA Streptococcus suis isolate S10

40.157

91.587

0.368

Multiple sequence alignment