Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   E3T12_RS09225 Genome accession   NZ_CP047779
Coordinates   1815859..1816572 (+) Length   237 a.a.
NCBI ID   WP_160190047.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1559     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810859..1821572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3T12_RS09165 (E3T12_09165) - 1811844..1812107 (-) 264 WP_001205732.1 hypothetical protein -
  E3T12_RS09170 (E3T12_09170) - 1812116..1812376 (-) 261 WP_000291503.1 DUF1108 family protein -
  E3T12_RS09175 (E3T12_09175) - 1812357..1812683 (-) 327 WP_000165375.1 DUF2482 family protein -
  E3T12_RS09180 (E3T12_09180) - 1812778..1812939 (-) 162 WP_000066017.1 DUF1270 domain-containing protein -
  E3T12_RS09185 (E3T12_09185) - 1812936..1813256 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  E3T12_RS09190 (E3T12_09190) - 1813315..1813947 (+) 633 WP_000275058.1 hypothetical protein -
  E3T12_RS09195 (E3T12_09195) - 1813962..1814102 (-) 141 WP_000939496.1 hypothetical protein -
  E3T12_RS09200 (E3T12_09200) - 1814133..1814330 (-) 198 WP_001148855.1 hypothetical protein -
  E3T12_RS09205 (E3T12_09205) - 1814346..1815098 (-) 753 WP_001148605.1 phage antirepressor KilAC domain-containing protein -
  E3T12_RS09210 (E3T12_09210) - 1815149..1815478 (+) 330 WP_000128907.1 hypothetical protein -
  E3T12_RS09215 (E3T12_09215) - 1815467..1815682 (-) 216 WP_001025874.1 Thoeris anti-defense Tad2 family protein -
  E3T12_RS14730 - 1815698..1815775 (-) 78 Protein_1791 XRE family transcriptional regulator -
  E3T12_RS09220 (E3T12_09220) - 1815747..1815896 (-) 150 WP_160190046.1 transcriptional regulator -
  E3T12_RS09225 (E3T12_09225) irvR 1815859..1816572 (+) 714 WP_160190047.1 XRE family transcriptional regulator Regulator
  E3T12_RS09230 (E3T12_09230) - 1816588..1817520 (+) 933 WP_000759682.1 exonuclease domain-containing protein -
  E3T12_RS09235 (E3T12_09235) - 1817526..1817867 (+) 342 WP_000591749.1 hypothetical protein -
  E3T12_RS09240 (E3T12_09240) - 1818071..1818217 (+) 147 WP_048517765.1 hypothetical protein -
  E3T12_RS09245 (E3T12_09245) - 1818353..1818817 (+) 465 WP_000825947.1 hypothetical protein -
  E3T12_RS09250 (E3T12_09250) - 1818876..1819913 (+) 1038 WP_000857191.1 tyrosine-type recombinase/integrase -
  E3T12_RS09255 (E3T12_09255) sph 1819970..1820796 (+) 827 Protein_1799 sphingomyelin phosphodiesterase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26959.54 Da        Isoelectric Point: 5.2021

>NTDB_id=361258 E3T12_RS09225 WP_160190047.1 1815859..1816572(+) (irvR) [Staphylococcus aureus strain UP_1559]
MNKARNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=361258 E3T12_RS09225 WP_160190047.1 1815859..1816572(+) (irvR) [Staphylococcus aureus strain UP_1559]
ATGAACAAAGCAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401