Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   FCJ76_RS13975 Genome accession   NZ_CP039935
Coordinates   2678746..2679492 (-) Length   248 a.a.
NCBI ID   WP_080474433.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2673746..2684492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS13950 mreC 2674152..2675024 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  FCJ76_RS13955 mreB 2675055..2676068 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  FCJ76_RS13960 radC 2676160..2676855 (-) 696 WP_003246034.1 DNA repair protein RadC -
  FCJ76_RS13965 maf 2676892..2677461 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  FCJ76_RS13970 spoIIB 2677614..2678612 (-) 999 WP_064670972.1 stage II sporulation protein SpoIIB -
  FCJ76_RS13975 comC 2678746..2679492 (-) 747 WP_080474433.1 A24 family peptidase Machinery gene
  FCJ76_RS13980 folC 2679633..2680925 (-) 1293 WP_043856952.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  FCJ76_RS13985 valS 2680985..2683627 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  FCJ76_RS13990 - 2684075..2684266 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=361149 FCJ76_RS13975 WP_080474433.1 2678746..2679492(-) (comC) [Bacillus subtilis strain H19]
MLSLLFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=361149 FCJ76_RS13975 WP_080474433.1 2678746..2679492(-) (comC) [Bacillus subtilis strain H19]
ATGCTATCCCTTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment