Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FCJ76_RS12690 Genome accession   NZ_CP039935
Coordinates   2458169..2458936 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2453169..2463936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS12670 ppsR 2453343..2454155 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  FCJ76_RS12675 ccpN 2454181..2454819 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  FCJ76_RS12680 glyS 2454952..2456991 (-) 2040 WP_064671021.1 glycine--tRNA ligase subunit beta -
  FCJ76_RS12685 glyQ 2456984..2457871 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  FCJ76_RS12690 recO 2458169..2458936 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  FCJ76_RS12695 yqzL 2458973..2459116 (-) 144 WP_003230053.1 YqzL family protein -
  FCJ76_RS12700 era 2459264..2460169 (-) 906 WP_003230051.1 GTPase Era -
  FCJ76_RS12705 - 2460150..2460560 (-) 411 WP_032722130.1 cytidine deaminase -
  FCJ76_RS12710 unpK 2460679..2461050 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  FCJ76_RS12715 ybeY 2461031..2461504 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  FCJ76_RS12720 pgpH 2461505..2463640 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=361141 FCJ76_RS12690 WP_015384118.1 2458169..2458936(-) (recO) [Bacillus subtilis strain H19]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=361141 FCJ76_RS12690 WP_015384118.1 2458169..2458936(-) (recO) [Bacillus subtilis strain H19]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTTTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTCTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAGCATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment