Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FCJ76_RS11135 Genome accession   NZ_CP039935
Coordinates   2187615..2188235 (+) Length   206 a.a.
NCBI ID   WP_024571847.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2182615..2193235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS11095 ptsA 2183747..2184253 (-) 507 WP_134981814.1 PTS glucose transporter subunit IIA -
  FCJ76_RS11100 ypqA 2184391..2184810 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  FCJ76_RS11105 sppG 2184831..2185208 (-) 378 WP_014477159.1 YppG family protein -
  FCJ76_RS11110 yppF 2185395..2185583 (+) 189 WP_003230690.1 YppF family protein -
  FCJ76_RS11115 yppE 2185622..2185993 (-) 372 WP_063335219.1 YppE family protein -
  FCJ76_RS11120 yppD 2186039..2186284 (-) 246 WP_015251831.1 YppD family protein -
  FCJ76_RS11125 sspM 2186483..2186587 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  FCJ76_RS11130 yppC 2186612..2187574 (-) 963 WP_134981815.1 DUF2515 domain-containing protein -
  FCJ76_RS11135 recU 2187615..2188235 (+) 621 WP_024571847.1 Holliday junction resolvase RecU Machinery gene
  FCJ76_RS11140 ponA 2188257..2191001 (+) 2745 WP_137200828.1 PBP1A family penicillin-binding protein -
  FCJ76_RS11145 ypoC 2191077..2191571 (-) 495 WP_009967579.1 YpoC family protein -
  FCJ76_RS11150 nth 2191568..2192227 (-) 660 WP_009967580.1 endonuclease III -
  FCJ76_RS11155 dnaD 2192246..2192944 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23975.09 Da        Isoelectric Point: 9.6240

>NTDB_id=361129 FCJ76_RS11135 WP_024571847.1 2187615..2188235(+) (recU) [Bacillus subtilis strain H19]
MIRYPNGKTFQPKHSVSSQNSQKRSPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=361129 FCJ76_RS11135 WP_024571847.1 2187615..2188235(+) (recU) [Bacillus subtilis strain H19]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGTCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment