Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   FCJ76_RS10305 Genome accession   NZ_CP039935
Coordinates   2051864..2052994 (+) Length   376 a.a.
NCBI ID   WP_134982820.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2050410..2070913 2051864..2052994 within 0


Gene organization within MGE regions


Location: 2050410..2070913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS10295 - 2050410..2050784 (+) 375 WP_021481445.1 YoqO family protein -
  FCJ76_RS10300 - 2051590..2051730 (+) 141 WP_134982818.1 phage holin -
  FCJ76_RS10305 rapC 2051864..2052994 (+) 1131 WP_134982820.1 tetratricopeptide repeat protein Regulator
  FCJ76_RS21185 - 2052984..2053127 (+) 144 WP_153801665.1 hypothetical protein -
  FCJ76_RS21380 - 2053281..2053481 (-) 201 WP_021481449.1 hypothetical protein -
  FCJ76_RS21385 - 2053704..2053873 (-) 170 Protein_1966 hypothetical protein -
  FCJ76_RS10320 - 2053871..2054026 (-) 156 Protein_1967 T7SS effector LXG polymorphic toxin -
  FCJ76_RS10325 yobM 2054127..2054675 (-) 549 Protein_1968 SMI1/KNR4 family protein -
  FCJ76_RS10330 aoxN 2054803..2056239 (+) 1437 WP_134982822.1 flavin monoamine oxidase family protein -
  FCJ76_RS10335 yobO 2056665..2059085 (+) 2421 WP_134982824.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  FCJ76_RS10340 csaA 2059672..2060004 (-) 333 WP_085187532.1 chaperone CsaA -
  FCJ76_RS10345 yobQ 2060069..2060794 (-) 726 WP_134982845.1 helix-turn-helix domain-containing protein -
  FCJ76_RS10350 yobR 2060809..2061552 (-) 744 WP_134982826.1 GNAT family N-acetyltransferase -
  FCJ76_RS10355 yobS 2061630..2062205 (-) 576 WP_134982828.1 TetR/AcrR family transcriptional regulator -
  FCJ76_RS10360 yobT 2062212..2062913 (-) 702 WP_086343935.1 MBL fold metallo-hydrolase -
  FCJ76_RS10365 yobU 2062990..2063472 (-) 483 WP_086343936.1 GyrI-like domain-containing protein -
  FCJ76_RS10370 yobV 2063526..2064467 (-) 942 WP_086343937.1 YafY family protein -
  FCJ76_RS10375 csk22 2064674..2065219 (+) 546 WP_042976022.1 mother cell-specific sporulation protein Csk22 -
  FCJ76_RS10380 czrA 2065246..2065569 (-) 324 WP_076458013.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  FCJ76_RS10385 yocA 2065763..2066440 (+) 678 WP_003231283.1 lysozyme family protein -
  FCJ76_RS10390 ctaM 2066530..2067066 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  FCJ76_RS10395 yocB 2067203..2067985 (-) 783 WP_137200812.1 VLRF1 family aeRF1-type release factor -
  FCJ76_RS10400 - 2068156..2068653 (+) 498 WP_134982833.1 hypothetical protein -
  FCJ76_RS10405 yocD 2068716..2069693 (+) 978 WP_134982835.1 LD-carboxypeptidase -
  FCJ76_RS10410 desE 2069855..2070913 (+) 1059 WP_134982837.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44366.13 Da        Isoelectric Point: 5.7041

>NTDB_id=361128 FCJ76_RS10305 WP_134982820.1 2051864..2052994(+) (rapC) [Bacillus subtilis strain H19]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIKSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=361128 FCJ76_RS10305 WP_134982820.1 2051864..2052994(+) (rapC) [Bacillus subtilis strain H19]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAAGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457

Multiple sequence alignment