Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   FCJ76_RS07915 Genome accession   NZ_CP039935
Coordinates   1502493..1502771 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain H19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1497493..1507771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS07895 panEB 1498681..1499592 (+) 912 WP_137200747.1 ketopantoate reductase family protein -
  FCJ76_RS07900 ampS 1499626..1500858 (-) 1233 WP_024572116.1 aminopeptidase -
  FCJ76_RS07905 ykpC 1500967..1501101 (-) 135 WP_003238865.1 protein YkpC -
  FCJ76_RS07910 mreBH 1501202..1502209 (-) 1008 WP_024572115.1 cell shape-determining protein MreBH -
  FCJ76_RS07915 abrB 1502493..1502771 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  FCJ76_RS07920 kinC 1502961..1504247 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  FCJ76_RS07925 ykqA 1504263..1505090 (+) 828 WP_137200749.1 gamma-glutamylcyclotransferase -
  FCJ76_RS07930 ktrC 1505153..1505818 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  FCJ76_RS07935 ade 1505973..1507706 (+) 1734 WP_134982991.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=361123 FCJ76_RS07915 WP_003244728.1 1502493..1502771(+) (abrB) [Bacillus subtilis strain H19]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=361123 FCJ76_RS07915 WP_003244728.1 1502493..1502771(+) (abrB) [Bacillus subtilis strain H19]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment