Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   FCJ76_RS06325 Genome accession   NZ_CP039935
Coordinates   1213537..1214688 (+) Length   383 a.a.
NCBI ID   WP_086343707.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 1208537..1219688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS06290 yjbB 1208997..1210214 (+) 1218 WP_086344583.1 MFS transporter -
  FCJ76_RS06295 yjbC 1210378..1210956 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  FCJ76_RS06300 spx 1211137..1211532 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  FCJ76_RS06305 yjbE 1211787..1212443 (-) 657 WP_003232944.1 TerC family protein -
  FCJ76_RS06310 - 1212613..1212753 (+) 141 WP_119122854.1 hypothetical protein -
  FCJ76_RS06315 mecA 1212720..1213376 (+) 657 WP_003245194.1 adaptor protein MecA Regulator
  FCJ76_RS06320 - 1213371..1213493 (-) 123 WP_003245684.1 hypothetical protein -
  FCJ76_RS06325 coiA 1213537..1214688 (+) 1152 WP_086343707.1 competence protein CoiA Machinery gene
  FCJ76_RS06330 pepF 1214918..1216747 (+) 1830 WP_003245178.1 oligoendopeptidase F -
  FCJ76_RS06335 - 1216785..1216952 (-) 168 WP_003244944.1 hypothetical protein -
  FCJ76_RS06345 spxH 1217267..1218166 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  FCJ76_RS06350 bhbI 1218163..1218561 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  FCJ76_RS06355 cwlQ 1218813..1219547 (-) 735 WP_017695685.1 bifunctional muramidase/murein lytic transglycosylase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 44958.00 Da        Isoelectric Point: 9.8077

>NTDB_id=361117 FCJ76_RS06325 WP_086343707.1 1213537..1214688(+) (coiA) [Bacillus subtilis strain H19]
MFSAVTEDGQLFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLK
TQRASPILEPYIRTINQRPDVMARIKEHMLAVEYQCATIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAF
HWQFINASPYRELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGADDLFFTEPKPSIQYSGWTKAIHRFRHKPH
RFNSKETNRLRLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHNK
NIALRFECSEECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPEGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=361117 FCJ76_RS06325 WP_086343707.1 1213537..1214688(+) (coiA) [Bacillus subtilis strain H19]
TTGTTTAGTGCTGTGACTGAAGACGGCCAACTGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGAGGAGACG
GTTCTTCTGTCCGGTATGCGGGGGAGAGCTAGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGA
ACAAGTCCTGCTCCATAGACATCGAACCGGAAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAA
ACACAACGGGCTTCACCAATATTGGAGCCGTATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGA
GCATATGCTTGCTGTTGAATATCAATGCGCCACTATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAG
AAGGAATCATCCCGCAGTGGATTATGGGATACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCTTTT
CATTGGCAGTTTATCAATGCAAGTCCATACAGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAG
CCACATCATTCCATTCTACACAAACCATTCTTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGACGATC
TTTTTTTCACTGAACCGAAACCCTCAATTCAATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCAT
CGGTTTAACTCAAAGGAAACAAATCGCCTTAGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGAC
TGAAGTGTTTGTTCCTGTTAGAAAAGGGGCAGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTA
TGACGGATCTTGGAGATAAACGTGCGCCAATTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAG
AACATTGCACTCAGGTTCGAATGCAGCGAAGAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAA
GGGATTTTTAAGGGAGACTCAGAAAGAAGTATATGTACTGAATCAGCCTGAAGGCGGCATACACTCAATGCAGGATCTCA
TAGAAAGAGACCGCAGCTGTTTTATAGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.123

97.389

0.956


Multiple sequence alignment