Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   FCJ76_RS05750 Genome accession   NZ_CP039935
Coordinates   1100557..1101135 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain H19     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1095557..1106135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS05730 hemAT 1096068..1097366 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  FCJ76_RS05735 comW 1097505..1099034 (-) 1530 WP_014476355.1 FAD-dependent oxidoreductase -
  FCJ76_RS05740 yhxC 1099146..1100003 (+) 858 WP_128737715.1 SDR family oxidoreductase -
  FCJ76_RS05745 yhzC 1100031..1100264 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  FCJ76_RS05750 comK 1100557..1101135 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  FCJ76_RS05755 yhxD 1101180..1102079 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  FCJ76_RS05760 yhjA 1102297..1102566 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  FCJ76_RS05765 yhjB 1102610..1104079 (-) 1470 WP_128737717.1 sodium:solute symporter -
  FCJ76_RS05770 yhjC 1104076..1104276 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  FCJ76_RS05775 - 1104475..1104846 (-) 372 WP_014476361.1 hypothetical protein -
  FCJ76_RS05780 yhjE 1104998..1105621 (+) 624 WP_010886465.1 VTT domain-containing protein -
  FCJ76_RS05785 lepB 1105623..1106129 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=361109 FCJ76_RS05750 WP_003245329.1 1100557..1101135(+) (comK) [Bacillus subtilis strain H19]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=361109 FCJ76_RS05750 WP_003245329.1 1100557..1101135(+) (comK) [Bacillus subtilis strain H19]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment