Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FCJ76_RS02030 Genome accession   NZ_CP039935
Coordinates   372383..372832 (-) Length   149 a.a.
NCBI ID   WP_024572180.1    Uniprot ID   -
Organism   Bacillus subtilis strain H19     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 367383..377832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCJ76_RS01990 - 367795..367992 (+) 198 WP_134982414.1 hypothetical protein -
  FCJ76_RS01995 yckC 368012..368467 (+) 456 WP_137200561.1 RDD family protein -
  FCJ76_RS02000 yckD 368549..368881 (+) 333 WP_137200563.1 YckD family protein -
  FCJ76_RS02005 - 369009..369431 (+) 423 WP_175405006.1 MarR family transcriptional regulator -
  FCJ76_RS02010 - 369419..369760 (+) 342 WP_032724911.1 DUF3147 family protein -
  FCJ76_RS02015 - 369779..370416 (+) 638 Protein_347 AAA family ATPase -
  FCJ76_RS02020 bglC 370488..371921 (+) 1434 WP_134982418.1 6-phospho-beta-glucosidase -
  FCJ76_RS02025 nin/comJ 371958..372356 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  FCJ76_RS02030 nucA/comI 372383..372832 (-) 450 WP_024572180.1 DNA-entry nuclease Machinery gene
  FCJ76_RS02035 tlpC 373000..374724 (-) 1725 WP_137200565.1 methyl-accepting chemotaxis protein TlpC -
  FCJ76_RS02040 hxlB 374835..375392 (-) 558 WP_134982420.1 6-phospho-3-hexuloisomerase -
  FCJ76_RS02045 hxlA 375398..376030 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  FCJ76_RS02050 hxlR 376262..376624 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16428.34 Da        Isoelectric Point: 4.5282

>NTDB_id=361099 FCJ76_RS02030 WP_024572180.1 372383..372832(-) (nucA/comI) [Bacillus subtilis strain H19]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETISFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=361099 FCJ76_RS02030 WP_024572180.1 372383..372832(-) (nucA/comI) [Bacillus subtilis strain H19]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATAATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCTCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment