Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FBR08_RS05240 Genome accession   NZ_CP039934
Coordinates   1119368..1120738 (-) Length   456 a.a.
NCBI ID   WP_158961751.1    Uniprot ID   -
Organism   Myroides fluvii strain CJ210     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114368..1125738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBR08_RS05220 - 1114803..1115345 (+) 543 WP_158961747.1 hypothetical protein -
  FBR08_RS05225 - 1115420..1116175 (+) 756 WP_158961748.1 PdaC/SigV domain-containing protein -
  FBR08_RS05230 - 1116202..1117659 (+) 1458 WP_158961749.1 oligosaccharide flippase family protein -
  FBR08_RS05235 - 1117696..1119348 (-) 1653 WP_158961750.1 DUF4139 domain-containing protein -
  FBR08_RS05240 radA 1119368..1120738 (-) 1371 WP_158961751.1 DNA repair protein RadA Machinery gene
  FBR08_RS05245 - 1120934..1121650 (-) 717 WP_158961752.1 LytTR family DNA-binding domain-containing protein -
  FBR08_RS05250 - 1121647..1122693 (-) 1047 WP_158961753.1 sensor histidine kinase -
  FBR08_RS05255 - 1122869..1125217 (+) 2349 WP_158961754.1 outer membrane beta-barrel family protein -
  FBR08_RS16880 - 1125219..1125482 (-) 264 WP_233266254.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49974.46 Da        Isoelectric Point: 6.0321

>NTDB_id=361086 FBR08_RS05240 WP_158961751.1 1119368..1120738(-) (radA) [Myroides fluvii strain CJ210]
MAKVKTAFFCQSCGSQSPKWMGQCPTCKEWNTLIEEVIQKEEKTGWKAVSSGASTSKRVAKPLKVKEIDSAEEIRMNTLD
GELNRVLGGGLVPGSMVLLGGEPGIGKSTLLLQISLRLPFKVLYVSGEESQKQIKMRAERINPNNENCYILTETNTQNIF
RQIEEIQPDVLIIDSIQTLHTDYIESSAGTVSQIKECTAELTKFAKETGTPVLIIGHITKDGSIAGPKMLEHMVDTVLQF
EGDRNHVYRILRANKNRFGSTAELGIYEMQGSGLREVSNPSEILISHKDEELSGTAIAATLEGMRPLMVEVQSLVSTAVY
GTPQRSATGYNLKRLNMLLAVLEKRAGFRLGQKDVFLNITGGITVDDPAIDLGVVAAILSSDQDISIEKGVTFAGEVGLS
GEIRPINRVDQRIQEAEKLGFTQILVSKYNKISYTGTGIKVILVTKIEDVVEHLFG

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=361086 FBR08_RS05240 WP_158961751.1 1119368..1120738(-) (radA) [Myroides fluvii strain CJ210]
ATGGCAAAAGTAAAAACGGCTTTTTTCTGTCAAAGTTGTGGATCTCAATCTCCCAAGTGGATGGGACAATGTCCGACGTG
TAAAGAGTGGAACACCTTGATAGAAGAGGTGATTCAGAAAGAAGAAAAAACAGGGTGGAAAGCCGTTAGTTCGGGTGCCT
CAACTTCCAAACGTGTAGCCAAGCCTTTGAAAGTAAAAGAAATTGACAGTGCAGAAGAAATCCGAATGAATACCTTGGAC
GGGGAGTTAAACCGCGTGCTGGGAGGAGGATTAGTGCCTGGATCTATGGTTTTACTTGGAGGTGAACCGGGAATTGGAAA
GAGTACGTTGTTGTTGCAAATTTCGTTGCGCTTACCTTTTAAAGTACTCTATGTTTCTGGAGAAGAAAGTCAGAAGCAAA
TTAAGATGCGCGCAGAACGCATCAATCCCAATAATGAGAATTGCTATATCCTAACAGAAACCAATACCCAAAATATTTTT
CGTCAGATTGAAGAAATTCAACCCGATGTATTGATTATTGACTCCATTCAAACTTTGCATACCGATTATATTGAGTCTTC
GGCTGGAACTGTTTCACAGATTAAAGAGTGTACAGCGGAACTAACGAAGTTTGCCAAAGAAACAGGAACGCCTGTTTTAA
TTATTGGTCATATTACCAAAGATGGGAGTATTGCGGGGCCGAAAATGTTAGAACACATGGTCGATACGGTGTTACAGTTT
GAAGGAGATCGCAATCACGTGTACCGTATTTTGCGTGCCAATAAAAACCGTTTTGGATCAACAGCCGAATTGGGCATTTA
CGAAATGCAAGGCAGTGGTTTGCGTGAAGTGTCGAATCCGTCTGAGATTCTGATTTCGCATAAAGATGAAGAATTATCCG
GAACGGCTATTGCGGCCACTTTAGAAGGAATGCGTCCGCTGATGGTGGAAGTGCAATCGCTGGTGAGTACCGCAGTCTAT
GGAACCCCGCAACGCAGTGCTACGGGATATAATCTAAAACGATTGAATATGTTATTGGCTGTGCTTGAAAAAAGAGCAGG
ATTTCGCCTCGGACAAAAAGACGTCTTTTTAAATATTACGGGGGGAATTACCGTGGATGATCCCGCGATTGACTTAGGGG
TTGTGGCGGCAATTTTATCTTCGGATCAAGATATCTCCATTGAAAAAGGAGTAACCTTCGCTGGAGAAGTTGGACTTTCT
GGAGAAATCAGACCGATTAACCGCGTGGATCAACGCATTCAAGAAGCTGAGAAATTGGGTTTTACCCAGATTCTAGTTTC
GAAATACAACAAAATTTCGTACACGGGAACGGGAATAAAAGTTATTTTAGTAACGAAGATTGAAGATGTTGTCGAACATC
TCTTTGGATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

AAA domain (AAA_25)

(82-222)

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

50

100

0.507
  radA Streptococcus pneumoniae Rx1

50

100

0.507
  radA Streptococcus pneumoniae R6

50

100

0.507
  radA Streptococcus pneumoniae TIGR4

50

100

0.507
  radA Bacillus subtilis subsp. subtilis str. 168

50.217

100

0.507
  radA Streptococcus mitis NCTC 12261

49.891

100

0.502
  radA Streptococcus mitis SK321

49.891

100

0.502

Multiple sequence alignment