Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LM5923_RS14855 Genome accession   NC_013768
Coordinates   2944477..2945013 (-) Length   178 a.a.
NCBI ID   WP_003721668.1    Uniprot ID   A0A0E0USV6
Organism   Listeria monocytogenes 08-5923     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2939477..2950013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM5923_RS14825 (LM5923_2914) - 2940275..2941003 (-) 729 WP_003721674.1 LytR/AlgR family response regulator transcription factor -
  LM5923_RS14830 (LM5923_2915) - 2941022..2942317 (-) 1296 WP_003721673.1 sensor histidine kinase -
  LM5923_RS14835 (LM5923_2916) - 2942413..2942574 (-) 162 WP_003721672.1 cyclic lactone autoinducer peptide -
  LM5923_RS14840 (LM5923_2917) - 2942558..2943172 (-) 615 WP_003727551.1 accessory gene regulator ArgB-like protein -
  LM5923_RS14845 (LM5923_2918) - 2943429..2944040 (-) 612 WP_009924128.1 PepSY domain-containing protein -
  LM5923_RS14850 (LM5923_2919) rpsR 2944194..2944433 (-) 240 WP_003721669.1 30S ribosomal protein S18 -
  LM5923_RS14855 (LM5923_2920) ssbA 2944477..2945013 (-) 537 WP_003721668.1 single-stranded DNA-binding protein Machinery gene
  LM5923_RS14860 (LM5923_2921) rpsF 2945069..2945362 (-) 294 WP_003721667.1 30S ribosomal protein S6 -
  LM5923_RS14865 (LM5923_2922) arcA 2945641..2946873 (-) 1233 WP_010989328.1 arginine deiminase -
  LM5923_RS14870 (LM5923_2923) - 2946953..2947612 (-) 660 WP_003721665.1 DedA family protein -
  LM5923_RS14875 (LM5923_2924) - 2947717..2948496 (-) 780 WP_003721664.1 MurR/RpiR family transcriptional regulator -
  LM5923_RS14880 (LM5923_2925) aguA 2948513..2949622 (-) 1110 WP_009911777.1 agmatine deiminase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19493.14 Da        Isoelectric Point: 4.7306

>NTDB_id=36105 LM5923_RS14855 WP_003721668.1 2944477..2945013(-) (ssbA) [Listeria monocytogenes 08-5923]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
PFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=36105 LM5923_RS14855 WP_003721668.1 2944477..2945013(-) (ssbA) [Listeria monocytogenes 08-5923]
ATGATGAATCGTGTAGTACTTGTAGGACGCTTAACAAAAGATCCTGAATTACGTTACACTCCAGCTGGTGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGCACTTTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCGGGCGTTGATGGCCGTGTTCAAACTCGT
AATTACGAGGGAAACGATGGTAAACGTGTTTATGTGACTGAAATTGTAGCAGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAAGTGGCAATAACAACAATAATTACAATAGCGGTGGAAATAACTTCGGAC
AAGCACCTACAAATAACGGTGGATTCGGACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAATAATGAT
CCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USV6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.539

100

0.685
  ssb Latilactobacillus sakei subsp. sakei 23K

55.618

100

0.556
  ssb Glaesserella parasuis strain SC1401

35.484

100

0.371
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

59.551

0.365

Multiple sequence alignment