Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FCS00_RS10100 Genome accession   NZ_CP039929
Coordinates   2171102..2172211 (+) Length   369 a.a.
NCBI ID   WP_059345894.1    Uniprot ID   -
Organism   Elizabethkingia sp. 2-6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2166102..2177211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCS00_RS10085 (FCS00_10085) - 2167471..2169003 (+) 1533 WP_059345896.1 YifB family Mg chelatase-like AAA ATPase -
  FCS00_RS10090 (FCS00_10090) - 2169010..2170131 (-) 1122 WP_059154432.1 DUF3078 domain-containing protein -
  FCS00_RS10095 (FCS00_10095) - 2170298..2171068 (+) 771 WP_059345895.1 rhomboid family intramembrane serine protease -
  FCS00_RS10100 (FCS00_10100) dprA 2171102..2172211 (+) 1110 WP_059345894.1 DNA-processing protein DprA Machinery gene
  FCS00_RS10105 (FCS00_10105) gdhA 2172397..2173761 (+) 1365 WP_059154430.1 NADP-specific glutamate dehydrogenase -
  FCS00_RS10110 (FCS00_10110) - 2173851..2174129 (-) 279 WP_059345893.1 hypothetical protein -
  FCS00_RS10115 (FCS00_10115) - 2174256..2174747 (-) 492 WP_059154428.1 YkgJ family cysteine cluster protein -
  FCS00_RS10120 (FCS00_10120) - 2174841..2175221 (+) 381 WP_059345892.1 group III truncated hemoglobin -
  FCS00_RS10125 (FCS00_10125) - 2175218..2175949 (-) 732 WP_059345891.1 DNA alkylation repair protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41260.12 Da        Isoelectric Point: 6.6306

>NTDB_id=361028 FCS00_RS10100 WP_059345894.1 2171102..2172211(+) (dprA) [Elizabethkingia sp. 2-6]
MFSEEHLYSIALRHCPQIGDLYFKKIVSTTGSAQKAWNLHKHELIKLYGIGNKIAEDIGKDSHLQFAETELEFCYKNNIQ
ILLSHQGNFPGLLHECDDAPAILYQKGKFDYQRTNISIVGTRKSSKYGKEFITEFLYSLKGNNIQTVSGLAVGTDTCTHE
ESLKNYIPTVAVLAHGFHMLYPDKNRKLADKILEQNGCLFTEFNSSQPPIRESFIQRNRIIAGISPTTIITETAYGGGSV
STANYANIYNREVLALPGPIEDKYSQGCNLLISQNKARIIVSIPDTIDYLGLVSKPVEQLPLFHEKEIPANLTSEQQLIL
SVIADSPNINPDEISEKVSLPVYKILPIILDLELLGHIKASSGRQYYPS

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=361028 FCS00_RS10100 WP_059345894.1 2171102..2172211(+) (dprA) [Elizabethkingia sp. 2-6]
ATGTTTTCCGAAGAGCATCTTTATTCCATAGCGCTAAGACATTGCCCGCAGATCGGTGATTTATACTTCAAGAAAATAGT
TAGTACAACAGGCTCCGCTCAAAAAGCATGGAACTTGCACAAACATGAACTGATTAAATTATATGGTATTGGAAACAAAA
TAGCAGAAGACATAGGGAAAGATTCTCATTTACAATTCGCCGAAACAGAACTAGAATTCTGCTATAAGAATAACATTCAG
ATTTTACTTTCTCATCAGGGAAATTTCCCAGGATTATTACACGAGTGCGACGATGCACCGGCGATACTCTATCAGAAAGG
AAAATTTGATTACCAAAGGACAAATATTAGTATAGTAGGCACAAGAAAAAGCTCGAAGTATGGTAAAGAGTTTATTACTG
AATTTCTGTATTCTCTGAAAGGTAACAATATCCAAACGGTGAGCGGACTTGCTGTAGGCACAGACACATGTACGCACGAA
GAATCTTTAAAAAATTACATTCCCACTGTCGCTGTATTAGCACATGGTTTTCACATGCTATATCCTGATAAAAACAGAAA
ATTAGCTGATAAAATTCTGGAACAAAACGGCTGTCTTTTTACAGAATTCAATTCATCACAACCACCGATAAGAGAAAGTT
TTATTCAGAGAAACAGAATTATTGCCGGTATATCACCCACTACCATCATAACAGAAACAGCTTATGGCGGAGGCTCTGTA
AGCACTGCTAATTATGCCAATATATATAACCGCGAAGTACTGGCTCTTCCGGGGCCAATTGAAGATAAATACAGCCAGGG
ATGCAACCTTTTGATTTCACAAAACAAAGCAAGAATTATTGTTTCCATTCCTGATACGATTGACTATTTGGGCCTTGTTT
CTAAACCTGTGGAACAGCTCCCTTTATTTCATGAAAAAGAGATCCCTGCGAACCTTACATCGGAGCAGCAACTAATCCTA
TCTGTAATAGCAGATTCTCCTAATATAAATCCGGATGAAATTTCCGAAAAAGTATCTCTCCCTGTTTATAAAATTTTACC
CATAATATTAGATCTGGAACTTTTGGGGCACATTAAAGCCTCTTCCGGGAGACAATATTACCCAAGCTGA

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(309-363)

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

51.913

99.187

0.515

Multiple sequence alignment