Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FCS00_RS08155 Genome accession   NZ_CP039929
Coordinates   1778932..1780278 (+) Length   448 a.a.
NCBI ID   WP_059156859.1    Uniprot ID   A0AAP1BUG8
Organism   Elizabethkingia sp. 2-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773932..1785278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCS00_RS08135 (FCS00_08135) - 1774463..1775035 (+) 573 WP_059343613.1 ribonuclease HII -
  FCS00_RS08145 (FCS00_08145) yidC 1775306..1777087 (-) 1782 WP_059343612.1 membrane protein insertase YidC -
  FCS00_RS08150 (FCS00_08150) - 1777096..1778715 (-) 1620 WP_059343611.1 CTP synthase -
  FCS00_RS08155 (FCS00_08155) radA 1778932..1780278 (+) 1347 WP_059156859.1 DNA repair protein RadA Machinery gene
  FCS00_RS08160 (FCS00_08160) - 1780299..1781453 (+) 1155 WP_059343610.1 AraC family transcriptional regulator -
  FCS00_RS08165 (FCS00_08165) - 1781456..1782136 (+) 681 WP_059343609.1 class I SAM-dependent methyltransferase -
  FCS00_RS08170 (FCS00_08170) - 1782143..1782847 (+) 705 WP_059343608.1 VanW family protein -
  FCS00_RS08180 (FCS00_08180) - 1783174..1784007 (+) 834 WP_059343607.1 SDR family oxidoreductase -
  FCS00_RS08185 (FCS00_08185) - 1784004..1784978 (+) 975 WP_059343606.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 49829.33 Da        Isoelectric Point: 6.7597

>NTDB_id=361024 FCS00_RS08155 WP_059156859.1 1778932..1780278(+) (radA) [Elizabethkingia sp. 2-6]
MAKVKTAYYCQNCGTQYPQWHGQCKNCGEWNTLVEEIIEKSTSKNYSGEKKQHIINIIEVNAQEEPRIATPSDELNRVLG
GGIVLGSVTLIGGEPGIGKSTLLLQLALKMRKRVLYVSGEESASQIKMRADRLTDLQNPECFLFTETSVDKILHEAKKLQ
PQFMILDSIQTLHSSLIESSPGTVSQIRECSSEIIKFAKETNTPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNHL
FRLLRANKNRFGSTSEIGIYEMISQGLKEIKNPSEILITKKFEELSGNSVAVTLEGNRPMLLEIQALVSTAVYGTPQRSC
TGFDAKRLNMLLAVLEKRAGFQLGSKDVFLNITGGIKTDDPALDLAVVASILSSNEDIAISEKYCFAGEIGLSGEIRPVP
QIEHRITEAEKLGYDKIYVSNLNKIPKRKFAIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=361024 FCS00_RS08155 WP_059156859.1 1778932..1780278(+) (radA) [Elizabethkingia sp. 2-6]
GTGGCAAAGGTCAAAACGGCATATTACTGTCAAAATTGCGGAACTCAGTATCCGCAGTGGCACGGACAGTGCAAAAATTG
TGGAGAATGGAATACTTTGGTTGAAGAAATTATTGAAAAATCGACTTCAAAAAATTATTCCGGAGAAAAGAAACAACATA
TCATTAACATTATTGAGGTCAACGCTCAGGAAGAACCAAGAATTGCAACCCCGAGCGACGAACTGAATCGTGTATTGGGA
GGTGGAATTGTACTGGGTTCTGTTACCTTAATTGGTGGTGAACCGGGCATCGGGAAATCTACCCTTTTGCTTCAGCTGGC
ACTAAAAATGCGCAAGCGTGTTTTGTATGTCTCCGGAGAAGAAAGCGCTTCACAAATTAAAATGCGTGCAGACCGTCTTA
CTGACCTCCAAAATCCAGAGTGCTTCCTTTTTACAGAAACTTCTGTGGATAAAATTCTGCATGAAGCGAAAAAGCTGCAG
CCACAGTTTATGATTCTGGACTCTATACAGACATTACATTCCAGTCTTATAGAAAGTTCACCGGGAACAGTTTCTCAGAT
TCGGGAATGTTCCTCAGAAATTATAAAGTTTGCCAAAGAAACCAATACCCCGGTATTTCTGGTGGGTCATATCACCAAAG
ACGGACAAATTGCCGGTCCGAAAGTACTGGAACATATGGTGGATGTGGTTCTAAATTTCGATGGCGACAGAAATCACCTT
TTCAGGTTACTAAGAGCTAATAAAAACCGTTTTGGCTCTACTTCCGAAATCGGTATTTATGAAATGATATCTCAGGGGCT
GAAAGAAATTAAAAATCCTTCTGAAATTCTGATTACCAAAAAATTTGAAGAGCTATCCGGTAACTCGGTAGCCGTAACCC
TGGAAGGAAACCGCCCAATGCTACTGGAAATTCAGGCTTTGGTAAGTACTGCTGTCTATGGTACTCCACAGAGAAGCTGC
ACTGGTTTCGATGCAAAAAGACTGAATATGCTTCTGGCAGTATTGGAGAAACGCGCAGGCTTCCAGCTTGGGTCGAAAGA
TGTGTTCCTGAATATAACCGGTGGTATCAAAACAGATGATCCCGCACTGGATTTAGCCGTCGTAGCCTCTATCCTGTCTT
CCAATGAAGATATTGCTATTTCCGAGAAGTATTGCTTTGCAGGAGAAATAGGTCTTAGTGGAGAAATACGGCCTGTTCCT
CAGATTGAACACCGGATCACAGAAGCCGAAAAGCTGGGATATGATAAAATCTACGTTTCCAATCTGAATAAAATACCTAA
ACGGAAATTTGCGATAAAGATTGAAGAAGTCAGCAAAATCGAAGATTTCCACGAAAGACTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-216)

Subunit ChlI of Mg-chelatase (ChlI)

(337-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae R6

48.359

100

0.493
  radA Streptococcus pneumoniae Rx1

48.359

100

0.493
  radA Streptococcus pneumoniae D39

48.359

100

0.493
  radA Streptococcus pneumoniae TIGR4

48.359

100

0.493
  radA Streptococcus mitis NCTC 12261

48.352

100

0.491
  radA Streptococcus mitis SK321

48.132

100

0.489
  radA Bacillus subtilis subsp. subtilis str. 168

49.188

96.205

0.473

Multiple sequence alignment