Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FAH66_RS04935 Genome accession   NZ_CP039887
Coordinates   1013117..1013812 (+) Length   231 a.a.
NCBI ID   WP_137040872.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1008117..1018812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS04915 (FAH66_04915) - 1008146..1008991 (+) 846 WP_137040870.1 DUF817 domain-containing protein -
  FAH66_RS04920 (FAH66_04920) - 1009050..1010591 (-) 1542 WP_137040871.1 OFA family MFS transporter -
  FAH66_RS04925 (FAH66_04925) - 1010817..1011398 (-) 582 WP_070460856.1 superoxide dismutase -
  FAH66_RS04930 (FAH66_04930) dnaB 1011553..1012959 (+) 1407 WP_063075500.1 replicative DNA helicase -
  FAH66_RS04935 (FAH66_04935) pilH 1013117..1013812 (+) 696 WP_137040872.1 GspH/FimT family pseudopilin Machinery gene
  FAH66_RS04940 (FAH66_04940) pilV 1013828..1014478 (+) 651 WP_208648089.1 type IV pilus modification protein PilV -
  FAH66_RS04945 (FAH66_04945) - 1014481..1015120 (+) 640 Protein_947 hypothetical protein -
  FAH66_RS04950 (FAH66_04950) pilK 1015099..1015644 (+) 546 WP_137040873.1 pilus assembly protein Machinery gene
  FAH66_RS04955 (FAH66_04955) - 1015649..1016137 (+) 489 WP_137040874.1 PilX family type IV pilin -
  FAH66_RS04960 (FAH66_04960) - 1016191..1016811 (-) 621 WP_137040875.1 Smr/MutS family protein -
  FAH66_RS04965 (FAH66_04965) - 1016948..1017325 (+) 378 WP_137040876.1 hypothetical protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 25975.44 Da        Isoelectric Point: 6.8497

>NTDB_id=360939 FAH66_RS04935 WP_137040872.1 1013117..1013812(+) (pilH) [Neisseria subflava strain ATCC 49275]
MYQTQKGFTLIELLIVITIAAVMAVIALPNMNQWIASRRAASQAEQIANLLRFARNEAVRLNLPVYICPAKIKSDGSHNG
CIHKKNSTSTSIGMLAYADKNENSSYQNDEDDLSIRYIILNGDTEKVEYRFDYIPSGTSLSALSSSDPKEVWWKFLPNGT
FEYLIDDKDGDKDKKNYQFSDGHIKISLTDKFATDAETKKARATVLLINGNGHVEICAKNDERKMCEYTSK

Nucleotide


Download         Length: 696 bp        

>NTDB_id=360939 FAH66_RS04935 WP_137040872.1 1013117..1013812(+) (pilH) [Neisseria subflava strain ATCC 49275]
ATGTATCAGACACAAAAAGGCTTCACCCTAATTGAGTTGCTGATCGTCATTACTATTGCAGCAGTAATGGCTGTCATCGC
ACTTCCCAATATGAATCAATGGATTGCCTCCAGACGTGCGGCATCGCAAGCAGAGCAAATTGCCAATCTGCTGCGCTTCG
CGCGTAATGAGGCCGTCCGTCTCAATCTTCCCGTTTACATCTGCCCGGCCAAAATCAAATCCGATGGCTCGCATAATGGT
TGCATTCACAAAAAAAACAGTACCAGTACCAGTATTGGTATGTTGGCCTACGCCGATAAAAACGAAAATTCCAGCTATCA
AAATGATGAAGACGATTTATCTATCCGCTACATCATTCTCAATGGCGACACTGAAAAAGTGGAATACCGCTTCGACTATA
TTCCCAGCGGTACTTCACTTTCCGCCCTCTCCTCTTCCGATCCAAAAGAAGTCTGGTGGAAATTCCTGCCCAATGGTACA
TTTGAATATTTAATCGATGATAAGGATGGTGATAAGGATAAGAAAAATTATCAATTTTCAGACGGTCACATCAAAATCAG
CCTGACGGATAAATTTGCCACCGATGCTGAAACCAAAAAAGCCCGTGCTACCGTACTTTTAATCAATGGCAATGGGCATG
TCGAAATCTGTGCTAAAAACGATGAGCGCAAAATGTGCGAATACACTTCCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Type II transport protein GspH (GspH)

(43-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

50.655

99.134

0.502

Multiple sequence alignment