Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FAH66_RS01835 Genome accession   NZ_CP039887
Coordinates   369765..371804 (+) Length   679 a.a.
NCBI ID   WP_137040454.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 364765..376804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS01805 (FAH66_01805) - 364925..365740 (+) 816 WP_137040450.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FAH66_RS01810 (FAH66_01810) purN 365837..366463 (+) 627 WP_049344053.1 phosphoribosylglycinamide formyltransferase -
  FAH66_RS01815 (FAH66_01815) - 366494..367162 (+) 669 WP_137040452.1 DUF3108 domain-containing protein -
  FAH66_RS01820 (FAH66_01820) - 367220..368713 (-) 1494 WP_107858142.1 Rne/Rng family ribonuclease -
  FAH66_RS01825 (FAH66_01825) grxC 368951..369208 (+) 258 WP_049329930.1 glutaredoxin 3 -
  FAH66_RS01830 (FAH66_01830) secB 369230..369664 (+) 435 WP_003684095.1 protein-export chaperone SecB -
  FAH66_RS01835 (FAH66_01835) recG 369765..371804 (+) 2040 WP_137040454.1 ATP-dependent DNA helicase RecG Machinery gene
  FAH66_RS01840 (FAH66_01840) gdhA 371876..373210 (-) 1335 WP_070584291.1 NADP-specific glutamate dehydrogenase -
  FAH66_RS01845 (FAH66_01845) - 373626..374420 (+) 795 WP_137040456.1 thymidylate synthase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75065.90 Da        Isoelectric Point: 7.1646

>NTDB_id=360931 FAH66_RS01835 WP_137040454.1 369765..371804(+) (recG) [Neisseria subflava strain ATCC 49275]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASHQKQMAAGKRIRAVGEIKHGFYGDEMIHPKIRDAESSGLAESLTPVYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGALPAWQRLKFDELLAQQLSMRLARQKRVSGTAA
ALGGDGTLTQALRHALPFALTDAQERVVSEIRRDMAQTHPMHRLLQGDVGSGKTIVAALSALNAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKAKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRFA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATKTLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGRLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLASREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=360931 FAH66_RS01835 WP_137040454.1 369765..371804(+) (recG) [Neisseria subflava strain ATCC 49275]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATCACCGATGTTTCCGCCAAGAAGCTCGAAAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTATGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCGATCGGTG
TGCCGTGTCAGGTTGAGGGCGAAGTTATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATCGCC
GACGGTTCCGGTAGTGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCCATCAGAAACAGATGGCGGCCGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGGTTTTACGGCGACGAGATGATTCATCCCAAAATCCGTGATGCCGAGAGCA
GCGGTTTGGCGGAAAGCCTCACGCCCGTCTATCCGACCGTAAACGGCTTGAACCAGCCCACTTTGCGCCGCATCATTCAA
ACGGCGTTGGACGTTACGCCGCTGCACGACACGCTCCCCGATGCCTTATTGGGTCGTCTGAAACTGCCGCACCTCGCCGA
AAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTCACCATCCACCAGCTTTCCGACGGCGCGCTTCCCGCATGGCAGC
GGCTCAAATTCGACGAACTTTTGGCGCAACAGTTGTCCATGCGGCTGGCGCGACAGAAGCGTGTCAGCGGCACGGCGGCG
GCATTGGGCGGCGACGGCACGCTGACCCAAGCCCTGCGCCACGCCTTGCCGTTTGCCCTGACCGATGCCCAAGAACGAGT
CGTGTCCGAAATCCGCCGCGACATGGCGCAAACCCATCCTATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTTGCTGCCTTGTCTGCTTTGAATGCCATTGAATCCGGTGCGCAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCATTTCATCAAGTTCAAACAATGGCTCGAACCTTTAGGACTCGAAGTCGTCTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAGCCAAACTCGCCGACGGCACCGTCAAAATCGCCGTCGGTACGCACGCCCTGTTTT
CAGACGACGTCGAGTTTCAAAATTTAGGCTTGGTGATTGTGGACGAACAACACCGCTTCGGCGTCGCCCAACGCTTCGCC
CTCAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCCATTCCGCGTACGCTTGCCATGAGTTTTTT
CGCCGACTTAGACGTGTCTGTTATCGACGAATTGCCGCCCGGGCGCACCCCGATTAAGACTCGCCTCGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTCGTCCTCAACATCTGCCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAAAGCGAAACCCTGCAACTGCAAACCGCTACCAAAACCCTCGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAAGCCGCTGAAAAAGCCGAAGTCATGGCGGAGTTTGCCGCAGGCCGTCTGAACGTCTTGG
TTGCCACCACCGTTATCGAAGTCGGCGTAGATGTGCCCAACGCCGCCCTGATGGTGATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGGCGGGTAGGGCGCGGCGCGGCGGAAAGCGTGTGCGTCCTCCTGTTTGCCGAACC
CTTGAGCGAACTCGCCAAAGCGCGGCTGAAAGTCATCTACGAACACACCGACGGCTTCGAAATCGCCCGCCAAGACCTCA
ACATCCGCGGCCCCGGCGAATTTCTCGGCGCACGCCAAAGCGGCGTCCCCATGCTGCGTTTCGCCAACCTCGAAGAAGAC
CTGCACCTCTTGGAACAGGCGCGCGAAATCGCCCCCTTGTTGATTGAGCAAAACCCCGAAATCGTCGAAGCGCATCTGGC
AAGGTGGCTTGCCAGCAGGGAAGGGTATTTGGGTGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)

RecG wedge domain (RecG_wedge)

(14-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.373

100

0.934

Multiple sequence alignment