Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   FAH66_RS01790 Genome accession   NZ_CP039887
Coordinates   361803..362264 (-) Length   153 a.a.
NCBI ID   WP_137040448.1    Uniprot ID   -
Organism   Neisseria subflava strain ATCC 49275     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 356803..367264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH66_RS01760 (FAH66_01760) - 356846..357535 (+) 690 WP_244285041.1 toxin-antitoxin system YwqK family antitoxin -
  FAH66_RS01765 (FAH66_01765) - 357581..358141 (-) 561 WP_137040446.1 adenine phosphoribosyltransferase -
  FAH66_RS01770 (FAH66_01770) gmk 358310..358927 (+) 618 WP_003686079.1 guanylate kinase -
  FAH66_RS01775 (FAH66_01775) rpoZ 358980..359186 (+) 207 WP_070631367.1 DNA-directed RNA polymerase subunit omega -
  FAH66_RS01780 (FAH66_01780) - 359291..361446 (+) 2156 Protein_340 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  FAH66_RS01785 (FAH66_01785) - 361566..361727 (-) 162 WP_003686014.1 hypothetical protein -
  FAH66_RS01790 (FAH66_01790) recX 361803..362264 (-) 462 WP_137040448.1 recombination regulator RecX Regulator
  FAH66_RS01795 (FAH66_01795) - 362365..363078 (-) 714 WP_049329866.1 phosphoglycolate phosphatase -
  FAH66_RS01800 (FAH66_01800) - 363499..364764 (+) 1266 WP_003685975.1 Glu/Leu/Phe/Val dehydrogenase -
  FAH66_RS01805 (FAH66_01805) - 364925..365740 (+) 816 WP_137040450.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  FAH66_RS01810 (FAH66_01810) purN 365837..366463 (+) 627 WP_049344053.1 phosphoribosylglycinamide formyltransferase -
  FAH66_RS01815 (FAH66_01815) - 366494..367162 (+) 669 WP_137040452.1 DUF3108 domain-containing protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17920.12 Da        Isoelectric Point: 8.0020

>NTDB_id=360930 FAH66_RS01790 WP_137040448.1 361803..362264(-) (recX) [Neisseria subflava strain ATCC 49275]
MKPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGINADDCREFLPDREDELQTAISVLRKKFKQEAQDLKEKQKQARFLAYRGFGSDTIQTALKTAWNEDEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=360930 FAH66_RS01790 WP_137040448.1 361803..362264(-) (recX) [Neisseria subflava strain ATCC 49275]
ATGAAACCTCCCAAAACCTTACGCGCCCGCGCCTTGGATATTCTTTCCCGTCAGGAAGTCAGCCGTGTTGGATTGAAACG
CAAACTGGCCCCACACGCTGAAAGTGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCAGAAGCCTATATTCACAGCAAGAGCAACCGTTATGGCACGCTCCGCCTCAAGCAAGCCTTGGCGCAA
CAAGGTATCAATGCAGACGACTGTCGGGAGTTCTTACCCGATAGGGAAGACGAGCTGCAAACCGCCATTTCCGTCTTGCG
TAAAAAATTCAAGCAAGAAGCTCAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCCTATCGCGGCTTTGGCT
CCGACACCATTCAGACGGCCTTAAAAACCGCGTGGAATGAAGACGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

77.027

96.732

0.745

Multiple sequence alignment