Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FAH67_RS07800 Genome accession   NZ_CP039886
Coordinates   1517059..1520091 (+) Length   1010 a.a.
NCBI ID   WP_039863660.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512059..1525091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS07775 (FAH67_07775) lptC 1512397..1512978 (-) 582 WP_003679857.1 LPS export ABC transporter periplasmic protein LptC -
  FAH67_RS07780 (FAH67_07780) - 1512975..1513511 (-) 537 WP_003679859.1 HAD family hydrolase -
  FAH67_RS07785 (FAH67_07785) - 1513578..1514552 (-) 975 WP_003679862.1 KpsF/GutQ family sugar-phosphate isomerase -
  FAH67_RS07790 (FAH67_07790) tal 1514687..1515742 (+) 1056 WP_003679864.1 transaldolase -
  FAH67_RS07795 (FAH67_07795) gluQRS 1515895..1516782 (+) 888 WP_003679867.1 tRNA glutamyl-Q(34) synthetase GluQRS -
  FAH67_RS07800 (FAH67_07800) pilC 1517059..1520091 (+) 3033 WP_039863660.1 PilC family type IV pilus tip adhesin Machinery gene
  FAH67_RS07815 (FAH67_07815) carA 1520699..1521829 (+) 1131 WP_039863662.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit -
  FAH67_RS07820 (FAH67_07820) - 1521968..1522225 (+) 258 WP_003679873.1 SemiSWEET family transporter -
  FAH67_RS07825 (FAH67_07825) - 1522398..1522793 (+) 396 WP_003679876.1 endonuclease domain-containing protein -
  FAH67_RS07840 (FAH67_07840) - 1523662..1524705 (+) 1044 WP_112890683.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 1010 a.a.        Molecular weight: 108704.81 Da        Isoelectric Point: 9.4304

>NTDB_id=360905 FAH67_RS07800 WP_039863660.1 1517059..1520091(+) (pilC) [Neisseria flavescens strain ATCC 13120]
MKKTPKRHLLRHTAVYTAMILAASSQQAAADEDQDFHYTVSDTGVVSGNKIFGQPGVRKGHKHIGVPGSRFGPKNLCREL
NVPFDPAVGCNILTALIYDFTYTNNDTLTAGFQTTTKLNFGGGSAPLWGKVSGLDAGNLAELNTDQWLTTYKPEMRGKTG
YDFTNISCFANGKTGDSRQCPTLPFRFYFNHDSNTIEATGQVRDDGVPIYKLKAHPWLGISFEIAAPSYNGSGNVTASSG
KWERPSADGSQSNIAALPIKVNAGNPQGKAFQLRAKLHKLTDPGGDSLTAQEIKLGEITMPKFSIRPTSSEGNSGRTMTV
WRIEDKGHIDVKLQLPNIGAGGCTRAQYTAAGPDGSRYAIVAPAPLGTGFPGKAAAVVTDPGSASSRILFYTLNKDNKEK
GGANYLNNTSFTEPVFTGRKAAIRLSNGVVLSDSNINGITNGTFGIGDNGNNQQEWKDVLLRWTDRRDGNDNQFNYFNNA
IDASTRGKLYSQQYRIRDNGKRDLGDIVNSPVTAVGDYLATAANDGMVHIFKKSGGGYNLKLSYIPGTMPRKDLDNQDST
LTKDLRRFANKNYTGGLYGVDGGFVLRQVNLNGQNRVFMFGAMGQGGKGAYALDLTRAESNQTGVSLFDVTGNGLGYTVG
TPQIGKIQNGKIQNGKYAAFLASGYATKDIESKENTTALYVYDLESNNGTLIRKIVVPGGKGGLSSPTLVDTNSDGTVDI
AYAGDRGGNMYRFDLSNWSVRTIFQGTKPITSAPAVSKLKNKRVVIFGTGSDLTEEDVANTKDIQSVYGIFDNDTKSSPA
QDGQGKGLLEQVLTKDGNTLFLSDYKRSDGSGDKGWVVRLEAGQRVTIKPTVVLRTAFVTIRNYTVNGCGAETAFLGINT
ADGGKLTKKSARPVVPDDRVAKKVGEKKDAKGNNIPVGCMEKDNATVCPNGYVYPKLLTASYLDSQKTSGHPRTADGDAG
GSGDDTDEPQKGNRCFFSKGVHTLLMNDMSDLDVVGPSCMKRISWREIFF

Nucleotide


Download         Length: 3033 bp        

>NTDB_id=360905 FAH67_RS07800 WP_039863660.1 1517059..1520091(+) (pilC) [Neisseria flavescens strain ATCC 13120]
ATGAAAAAAACACCCAAACGGCACTTGCTCCGCCATACTGCGGTTTATACCGCGATGATTTTGGCGGCATCGTCCCAACA
GGCAGCTGCAGACGAAGACCAAGATTTCCACTATACCGTCAGCGATACGGGTGTTGTAAGCGGCAATAAGATATTCGGTC
AGCCTGGTGTACGTAAAGGTCATAAACATATTGGTGTGCCGGGCAGTAGATTCGGCCCTAAAAATCTGTGTAGGGAGTTA
AATGTACCGTTTGACCCCGCCGTAGGATGTAATATTCTTACCGCACTGATTTACGATTTTACATATACCAACAACGATAC
GCTGACGGCGGGCTTTCAGACGACAACCAAATTGAACTTCGGCGGCGGTTCGGCTCCGCTGTGGGGCAAAGTTTCCGGTC
TCGATGCCGGCAATCTGGCAGAGCTCAACACCGACCAATGGCTGACGACCTACAAACCGGAGATGCGGGGTAAAACAGGT
TACGACTTTACCAATATATCCTGTTTTGCCAATGGGAAAACGGGTGATAGTAGGCAATGCCCGACCCTGCCTTTCCGATT
CTATTTCAACCACGACTCAAACACTATCGAGGCTACGGGGCAGGTGCGCGACGACGGCGTGCCGATATACAAACTGAAAG
CGCACCCGTGGCTGGGTATTTCCTTTGAAATTGCAGCCCCGTCATACAACGGCAGCGGCAATGTCACGGCAAGCTCGGGA
AAATGGGAACGCCCGAGTGCAGACGGCAGCCAATCAAACATAGCTGCTCTGCCTATAAAGGTAAATGCAGGCAATCCGCA
GGGAAAGGCATTCCAGCTTCGCGCCAAACTGCATAAGCTCACCGATCCAGGGGGCGACAGCCTTACCGCCCAAGAAATCA
AACTGGGCGAGATTACTATGCCTAAGTTCTCTATACGTCCAACAAGCAGCGAAGGAAATAGTGGTCGGACGATGACCGTA
TGGCGGATAGAAGACAAAGGCCATATCGACGTAAAACTCCAGCTCCCGAACATAGGTGCGGGCGGCTGTACGCGGGCGCA
ATATACCGCCGCCGGCCCGGACGGCAGCCGATACGCCATTGTCGCTCCCGCCCCTTTGGGCACGGGTTTCCCGGGCAAGG
CGGCGGCGGTCGTTACCGATCCCGGGTCGGCAAGCAGCCGCATCCTCTTTTACACCTTGAATAAAGACAATAAGGAAAAA
GGCGGCGCGAATTATCTGAACAACACAAGTTTTACCGAACCCGTCTTTACCGGACGCAAGGCGGCAATCCGCTTGTCAAA
CGGCGTAGTCTTGAGCGACAGCAATATTAACGGCATTACGAATGGCACATTCGGTATCGGCGATAATGGGAATAATCAGC
AAGAATGGAAAGACGTGTTATTGCGCTGGACCGACAGGCGCGATGGAAACGACAATCAGTTTAACTATTTTAACAATGCG
ATAGATGCTTCAACACGCGGCAAACTGTATAGCCAGCAATACCGCATCCGCGACAACGGCAAACGCGATTTGGGCGACAT
CGTCAACAGCCCGGTAACGGCGGTCGGCGACTATCTGGCAACCGCCGCCAACGACGGGATGGTGCATATCTTCAAAAAAA
GCGGCGGCGGCTACAATCTGAAGCTCAGCTACATCCCCGGCACGATGCCGCGCAAAGATTTGGATAACCAAGATTCCACC
TTAACAAAAGACCTGCGCCGCTTTGCCAACAAAAACTACACGGGCGGTTTGTACGGCGTGGACGGCGGCTTTGTCTTGCG
CCAAGTCAACTTAAACGGGCAAAACCGCGTGTTTATGTTCGGCGCGATGGGTCAAGGCGGCAAAGGTGCGTATGCCTTGG
ATTTGACCAGAGCCGAAAGCAACCAAACCGGCGTTTCCCTGTTTGACGTAACAGGCAACGGCTTGGGCTACACCGTCGGT
ACGCCCCAAATCGGCAAAATCCAAAACGGCAAAATCCAAAACGGCAAATACGCCGCCTTCCTTGCTTCCGGTTATGCGAC
TAAAGATATTGAGAGCAAAGAAAATACAACCGCGCTGTATGTGTATGATTTGGAAAGCAACAACGGTACGCTGATTAGAA
AAATCGTAGTACCCGGCGGCAAGGGCGGACTTTCATCACCTACGCTGGTGGATACAAATTCGGACGGCACAGTCGATATC
GCCTATGCCGGCGACCGGGGCGGGAATATGTACCGCTTTGATTTGTCCAACTGGTCTGTACGCACTATTTTCCAAGGTAC
GAAGCCGATTACCTCCGCGCCCGCCGTTTCCAAACTGAAAAACAAACGCGTCGTCATCTTCGGTACGGGCAGCGATTTGA
CCGAAGAAGATGTGGCTAATACAAAAGATATACAATCTGTTTACGGTATCTTTGATAACGATACGAAATCTTCGCCGGCA
CAAGACGGACAGGGCAAAGGGCTGCTCGAACAAGTGCTGACAAAAGACGGCAATACGCTGTTCTTGAGCGACTACAAAAG
GTCTGACGGCTCGGGCGACAAGGGCTGGGTAGTGAGATTGGAAGCCGGACAGCGCGTTACCATTAAACCGACCGTGGTAT
TGCGTACCGCCTTTGTCACCATCCGCAACTACACCGTCAACGGCTGCGGCGCGGAAACCGCATTTTTGGGCATCAATACC
GCCGACGGCGGCAAGCTGACCAAGAAAAGCGCGCGTCCCGTCGTGCCGGATGACCGCGTCGCCAAAAAAGTCGGCGAGAA
AAAAGACGCAAAAGGCAACAATATCCCCGTGGGCTGTATGGAAAAAGACAATGCAACCGTCTGCCCGAACGGATATGTTT
ATCCGAAACTGCTGACCGCAAGTTATCTGGACAGCCAAAAAACAAGCGGTCACCCGAGAACGGCAGACGGCGACGCGGGC
GGCAGCGGCGATGATACTGACGAACCCCAAAAAGGCAACCGCTGCTTCTTCAGCAAAGGCGTGCACACACTGCTGATGAA
CGATATGTCCGACTTGGACGTTGTCGGTCCAAGCTGTATGAAACGCATCAGCTGGCGTGAAATCTTTTTCTAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(516-824)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

48.95

100

0.531

Multiple sequence alignment