Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GVI48_RS23685 Genome accession   NZ_CP047697
Coordinates   5106324..5106929 (-) Length   201 a.a.
NCBI ID   WP_003091706.1    Uniprot ID   A0A0H2ZDR8
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5101324..5111929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS23670 - 5102433..5103308 (+) 876 WP_003091703.1 M24 family metallopeptidase -
  GVI48_RS23675 - 5103305..5105083 (+) 1779 WP_023089371.1 SDR family oxidoreductase -
  GVI48_RS23680 - 5105093..5105980 (+) 888 WP_003113144.1 metal-dependent hydrolase -
  GVI48_RS23685 clpP 5106324..5106929 (-) 606 WP_003091706.1 ATP-dependent Clp protease proteolytic subunit Regulator

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22142.22 Da        Isoelectric Point: 5.3571

>NTDB_id=360902 GVI48_RS23685 WP_003091706.1 5106324..5106929(-) (clpP) [Pseudomonas aeruginosa strain RD1-3]
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVESGDMIFDA
IRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQ
TPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=360902 GVI48_RS23685 WP_003091706.1 5106324..5106929(-) (clpP) [Pseudomonas aeruginosa strain RD1-3]
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTACGCGCTCAA
GGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTCGTCCAGCAGCTGCACATCCTCGCCT
CGATCAGCGACGATCCGATCTACATGTTCGTCAATTCCCCGGGTGGCCACGTCGAGTCCGGCGACATGATCTTCGACGCG
ATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTTGCCAGCGCCGGCGCGCTGATCTATGCCGCGGC
GGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTCCTCCTGCACCAGCCGTCGGGTGGCATCCAGGGGCCGGCGA
GCAACATCGAGATCTACCGCCGCGAGATCGTGCGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAG
ACGCCGGAAAAGATCAGTGCCGACACCGAGCGCGACTTCTGGCTGAACGCGGAAGAAGCCGTGCAGTACGGCCTGGTCAA
CAAGATCATCGTTTCGGAACGGGAGATCACGCTGCCTGGCCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.195

84.08

0.363

Multiple sequence alignment