Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FAH67_RS06255 Genome accession   NZ_CP039886
Coordinates   1222021..1224060 (-) Length   679 a.a.
NCBI ID   WP_039864050.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1217021..1229060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS06225 (FAH67_06225) - 1217368..1217910 (+) 543 WP_244284766.1 hypothetical protein -
  FAH67_RS11800 (FAH67_06230) - 1217907..1218170 (+) 264 WP_112890770.1 transposase -
  FAH67_RS11805 (FAH67_06235) - 1218188..1218670 (+) 483 WP_112890727.1 IS5 family transposase -
  FAH67_RS06240 (FAH67_06240) - 1218855..1219379 (+) 525 WP_341869324.1 transferrin-binding protein-like solute binding protein -
  FAH67_RS06245 (FAH67_06245) - 1219439..1220233 (-) 795 WP_039864049.1 thymidylate synthase -
  FAH67_RS06250 (FAH67_06250) gdhA 1220617..1221951 (+) 1335 WP_019272649.1 NADP-specific glutamate dehydrogenase -
  FAH67_RS06255 (FAH67_06255) recG 1222021..1224060 (-) 2040 WP_039864050.1 ATP-dependent DNA helicase RecG Machinery gene
  FAH67_RS11810 (FAH67_06260) - 1224250..1224513 (+) 264 WP_112890679.1 transposase -
  FAH67_RS11815 (FAH67_06265) - 1224531..1225064 (+) 534 WP_115287616.1 IS5 family transposase -
  FAH67_RS06270 (FAH67_06270) - 1225075..1225203 (+) 129 WP_232500814.1 type II toxin-antitoxin system RelE/ParE family toxin -
  FAH67_RS06275 (FAH67_06275) - 1225200..1225517 (+) 318 WP_004464523.1 XRE family transcriptional regulator -
  FAH67_RS06280 (FAH67_06280) - 1225799..1227139 (+) 1341 WP_004464521.1 DUF2868 domain-containing protein -
  FAH67_RS06285 (FAH67_06285) - 1227247..1227402 (-) 156 WP_004464520.1 hypothetical protein -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 75012.81 Da        Isoelectric Point: 6.8144

>NTDB_id=360902 FAH67_RS06255 WP_039864050.1 1222021..1224060(-) (recG) [Neisseria flavescens strain ATCC 13120]
MTPETQKQLKITDVSAKKLEKLNLHTAWDLVLHLPLRYEDETHIMPIKDAPIGVPCQVEGEVIHQEVTFKPRKQLIVQIA
DGSGSVLFLRFIHFYASNQKQMAIGKRIRAVGEIKHGFHGDEMIHPKIRDAESSGLAESLTPIYPTVNGLNQPTLRRIIQ
TALDVTPLHDTLPDALLGRLKLPHLAESLRLLHSPPPSFTIHQLSDGTLPAWQRLKFDELLAQQLSMRLARQKRVSGSAT
ALGGDGTLTQALRHALPFALTDAQERVVSEICRDMAQTHPMHRLLQGDVGSGKTIVAALSALTAIESGAQVAVMAPTEIL
AEQHFIKFKQWLEPLGLEVVWLSGSQRKKAKDEAKTKLADGTVKIAVGTHALFSDDVEFQNLGLVIVDEQHRFGVAQRLA
LKNKGRDVHQLMMSATPIPRTLAMSFFADLDVSVIDELPPGRTPIKTRLVNNVRRAEVEGFVLNICRKGQQAYWVCPLIE
ESETLQLQTATETLEQLQAALPELNIGLVHGRMKAAEKAEVMAEFAAGCLNVLVATTVIEVGVDVPNAALMVIEHAERMG
LAQLHQLRGRVGRGAAESVCVLLFAEPLSELAKARLKVIYEHTDGFEIARQDLNIRGPGEFLGARQSGVPMLRFANLEED
LHLLEQAREIAPLLIEQNPEIVEAHLARWLSSREGYLGV

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=360902 FAH67_RS06255 WP_039864050.1 1222021..1224060(-) (recG) [Neisseria flavescens strain ATCC 13120]
ATGACGCCCGAAACCCAAAAACAGCTCAAAATTACCGATGTTTCCGCCAAGAAACTCGAAAAACTCAACCTCCATACCGC
ATGGGATTTGGTGTTGCACCTGCCGTTGCGTTACGAGGACGAGACGCACATCATGCCGATTAAGGATGCGCCAATCGGCG
TGCCGTGTCAGGTCGAGGGCGAAGTCATCCATCAGGAAGTAACGTTCAAACCGCGCAAGCAGCTGATTGTCCAAATCGCC
GACGGTTCCGGTAGCGTCCTTTTTCTGCGCTTCATCCACTTTTACGCCAGCAACCAGAAACAGATGGCGATCGGCAAACG
CATCCGCGCCGTGGGCGAAATCAAACACGGGTTTCACGGCGACGAGATGATTCACCCTAAAATCCGCGATGCAGAGAGCA
GCGGTTTGGCAGAAAGCCTCACACCGATTTATCCAACCGTAAACGGTTTGAACCAGCCCACTTTGCGCCGCATCATTCAG
ACGGCCTTGGACGTTACGCCGTTGCACGATACTTTACCCGATGCTTTATTAGGCCGTCTGAAATTGCCGCACCTTGCCGA
AAGCCTGCGCCTTTTGCATTCGCCGCCGCCGAGTTTCACTATTCATCAACTTTCAGACGGCACGCTGCCCGCATGGCAAC
GGCTCAAATTTGACGAACTTTTGGCGCAACAGCTTTCCATGCGCTTGGCGCGGCAGAAGCGCGTCAGCGGCTCGGCCACG
GCATTGGGCGGCGACGGCACATTGACTCAAGCCCTGCGCCACGCTTTGCCGTTTGCCCTGACCGATGCGCAAGAAAGGGT
CGTGTCTGAAATCTGCCGAGATATGGCGCAAACCCACCCCATGCACCGCCTGCTGCAAGGCGATGTCGGCAGCGGCAAAA
CCATTGTGGCTGCTTTGTCTGCGTTGACGGCTATCGAATCCGGCGCGCAGGTGGCTGTAATGGCGCCGACCGAAATCCTT
GCCGAACAGCACTTCATTAAGTTCAAACAATGGCTGGAGCCTTTAGGCCTTGAAGTTGTTTGGCTTTCCGGCAGCCAGCG
CAAAAAAGCCAAAGACGAAGCCAAAACCAAACTCGCCGACGGTACCGTCAAAATCGCCGTCGGCACGCACGCTCTGTTTT
CAGACGACGTCGAGTTTCAAAATCTGGGTTTGGTAATTGTGGACGAGCAACACCGTTTCGGCGTTGCCCAACGCCTTGCC
CTTAAAAACAAAGGGCGCGACGTCCACCAGCTGATGATGTCCGCCACGCCCATCCCGCGCACGCTCGCCATGAGTTTCTT
CGCCGACTTGGACGTGTCCGTCATCGACGAATTGCCGCCCGGACGTACGCCGATTAAAACCCGTCTCGTCAACAACGTCC
GCCGCGCCGAAGTCGAAGGCTTTGTCCTTAATATTTGTCGCAAAGGGCAGCAGGCATACTGGGTCTGCCCGCTGATTGAA
GAGAGCGAAACCCTGCAACTGCAAACTGCTACCGAAACCCTAGAGCAGCTTCAGGCGGCATTGCCCGAACTCAACATCGG
CTTGGTACACGGGCGCATGAAGGCCGCCGAAAAAGCCGAAGTTATGGCGGAATTTGCGGCAGGCTGTCTGAACGTCTTGG
TCGCCACCACCGTCATTGAAGTCGGCGTAGATGTGCCCAATGCCGCCCTGATGGTCATCGAACACGCCGAGCGCATGGGC
TTGGCGCAGCTGCACCAATTACGCGGTCGGGTAGGGCGCGGAGCGGCAGAAAGCGTGTGCGTCCTCCTGTTTGCCGAGCC
CTTGAGCGAACTCGCCAAAGCGCGGTTGAAAGTCATCTACGAACACACCGACGGCTTTGAAATCGCCCGTCAAGACCTCA
ACATACGCGGTCCCGGTGAATTTCTTGGCGCACGTCAAAGCGGCGTTCCCATGCTGCGCTTTGCCAACCTTGAAGAAGAC
TTACACCTTTTGGAACAAGCGCGCGAAATCGCCCCTTTGCTGATTGAACAAAACCCTGAAATCGTCGAAGCGCATTTGGC
AAGATGGCTTTCCAGCAGGGAAGGTTATTTGGGCGTATAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(261-418)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(603-665)

RecG wedge domain (RecG_wedge)

(14-163)

Helicase conserved C-terminal domain (Helicase_C)

(467-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

93.373

100

0.934

Multiple sequence alignment