Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FAH67_RS05705 Genome accession   NZ_CP039886
Coordinates   1106069..1107445 (+) Length   458 a.a.
NCBI ID   WP_112890811.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1101069..1112445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS05685 (FAH67_05685) - 1101681..1103570 (-) 1890 WP_003680474.1 Z1 domain-containing protein -
  FAH67_RS05690 (FAH67_05690) - 1103571..1104611 (-) 1041 WP_003680475.1 restriction endonuclease PLD domain-containing protein -
  FAH67_RS05695 (FAH67_05695) - 1104608..1105732 (-) 1125 WP_003680477.1 DNA cytosine methyltransferase -
  FAH67_RS05700 (FAH67_05700) - 1105722..1105988 (-) 267 WP_244284786.1 hypothetical protein -
  FAH67_RS05705 (FAH67_05705) radA 1106069..1107445 (+) 1377 WP_112890811.1 DNA repair protein RadA Machinery gene
  FAH67_RS05710 (FAH67_05710) - 1107596..1108402 (+) 807 WP_039863911.1 DUF4198 domain-containing protein -
  FAH67_RS05715 (FAH67_05715) - 1108457..1109017 (-) 561 WP_003680482.1 pseudouridine synthase -
  FAH67_RS05725 (FAH67_05725) - 1109390..1109902 (+) 513 WP_232500817.1 hypothetical protein -
  FAH67_RS05730 (FAH67_05730) - 1109955..1110572 (+) 618 WP_003680484.1 4'-phosphopantetheinyl transferase superfamily protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49256.70 Da        Isoelectric Point: 7.0601

>NTDB_id=360900 FAH67_RS05705 WP_112890811.1 1106069..1107445(+) (radA) [Neisseria flavescens strain ATCC 13120]
MAKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTAAEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDVCRDGD

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=360900 FAH67_RS05705 WP_112890811.1 1106069..1107445(+) (radA) [Neisseria flavescens strain ATCC 13120]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGCACCGAATGCGGCGGCACCTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAATACGCTTCAAGAAAGCCTTGCCGCGCCCGAACCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ACACTTCGACCGTCCAATCCCTCTCCGCCGTTACCGCTGCCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTTATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACACTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAGGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCCACGGAAGGCGTGAACCTGCTTGCCGAAATCCGGATGGAAGCGATTCAAGCGGCG
TTGAAACAACACCAGCCCGAAGTCGTCGTCATCGACTCCATTCAAACTATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGCGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATTCTGGTCG
GACATGTAACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAATTGGGCGTATTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGCTCGT
GTGTTTTGGTTACACAAGAAGGCAGCCGCCCGCTTCTGGTCGAGATTCAGGCATTGGTCGATGACGCGCACGGCTTCACC
CCCAAACGCCTTACCGTCGGTCTCGAACAAAACCGCCTCGCGATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATCGC
CTGCTTCGACCAAGACGTATTCCTTAATGCTGTTGGCGGCGTCAAAATCGGCGAACCTGCCGCCGACCTTGCTGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCCATGCCTGAAAAAACCGTTGTATTTGGCGAAATCGGCTTAAGCGGCGAA
GTCCGCCCTGTCGCGCGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAATTTCCAAACCTGAAAATCTACGGCGTCAGCAGTTTGCAGGAAGCGATTGACGTTT
GTCGTGACGGGGACTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis NCTC 12261

47.461

98.908

0.469
  radA Streptococcus pneumoniae D39

47.566

98.69

0.469
  radA Streptococcus pneumoniae TIGR4

47.566

98.69

0.469
  radA Streptococcus pneumoniae R6

47.566

98.69

0.469
  radA Streptococcus pneumoniae Rx1

47.566

98.69

0.469
  radA Streptococcus mitis SK321

47.45

98.472

0.467

Multiple sequence alignment