Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   FAH67_RS05360 Genome accession   NZ_CP039886
Coordinates   1032481..1033629 (-) Length   382 a.a.
NCBI ID   WP_004464189.1    Uniprot ID   C0EL18
Organism   Neisseria flavescens strain ATCC 13120     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1027481..1038629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS05330 (FAH67_05330) - 1027888..1028535 (-) 648 WP_004464183.1 nuclease-related domain-containing protein -
  FAH67_RS05335 (FAH67_05335) folB 1028582..1028932 (-) 351 WP_039863612.1 dihydroneopterin aldolase -
  FAH67_RS05340 (FAH67_05340) plsY 1028990..1029601 (+) 612 WP_004464185.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  FAH67_RS05345 (FAH67_05345) greB 1029689..1030180 (-) 492 WP_004464186.1 transcription elongation factor GreB -
  FAH67_RS05350 (FAH67_05350) purF 1030255..1031802 (-) 1548 WP_004464187.1 amidophosphoribosyltransferase -
  FAH67_RS05355 (FAH67_05355) - 1031955..1032488 (-) 534 WP_004464188.1 CvpA family protein -
  FAH67_RS05360 (FAH67_05360) tpc 1032481..1033629 (-) 1149 WP_004464189.1 cell division protein FtsN Machinery gene
  FAH67_RS05365 (FAH67_05365) folC 1033643..1034926 (-) 1284 WP_004464190.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  FAH67_RS05370 (FAH67_05370) - 1034965..1035417 (-) 453 WP_039863614.1 protein YgfX -
  FAH67_RS05375 (FAH67_05375) - 1035422..1035781 (-) 360 WP_003747228.1 hypothetical protein -
  FAH67_RS05380 (FAH67_05380) - 1035845..1036573 (-) 729 WP_003747231.1 amino acid ABC transporter ATP-binding protein -
  FAH67_RS05385 (FAH67_05385) yecR 1036585..1037028 (-) 444 WP_081451144.1 YecR family lipoprotein -
  FAH67_RS05390 (FAH67_05390) rsmA 1037069..1037842 (-) 774 WP_004464193.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  FAH67_RS05395 (FAH67_05395) - 1037931..1038530 (-) 600 WP_004464194.1 Maf family protein -

Sequence


Protein


Download         Length: 382 a.a.        Molecular weight: 41814.82 Da        Isoelectric Point: 9.8424

>NTDB_id=360898 FAH67_RS05360 WP_004464189.1 1032481..1033629(-) (tpc) [Neisseria flavescens strain ATCC 13120]
MSDNKQKETPNGYDLDGYERLKRRNRRRLVLASGLVVASGMLFGLALTSGDDKNSPFKEAPVGQSQVKTADEPSKAVVLE
PNKEDVAAAEEAALHADAEAPNKPQNAGDEEDNEPVEVLKPSRESAPEDVGEPLVLINDTLDDGNIKGLEESERIQRAEA
AKREAAERRAEERRQRQAEQRAAAARKTQAQQEAAEKENALAAKKRVLQARAEKAEREAAAERNKLAQLEKAEKAIAERK
SAKNSKDSVKDKAEPAKKAEAKVEKPKNEKAKQETAKAEKADKVKTAEKPSEKAKPKAEKETAEAKPAKKAAIQAGYAEK
ERAQSLQRKMKAAGIDSTITEVMTDKGKVYRVKSASYKNARDAERDLNKLRVHGIAGQVTSE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=360898 FAH67_RS05360 WP_004464189.1 1032481..1033629(-) (tpc) [Neisseria flavescens strain ATCC 13120]
ATGTCCGACAATAAACAAAAAGAAACTCCAAACGGATACGATTTAGACGGTTACGAACGACTCAAACGTCGCAACCGCCG
TCGCTTGGTCTTGGCCTCCGGCTTGGTGGTGGCATCGGGTATGCTATTCGGTCTGGCGCTGACTTCCGGCGACGATAAAA
ATTCACCGTTTAAAGAAGCGCCTGTCGGTCAGAGCCAAGTCAAAACGGCTGACGAGCCGAGCAAGGCTGTTGTTTTAGAG
CCGAATAAAGAGGATGTCGCTGCTGCTGAAGAGGCTGCCCTCCATGCGGATGCCGAAGCACCAAATAAACCGCAAAATGC
AGGCGACGAAGAAGATAATGAGCCGGTTGAAGTATTGAAGCCAAGCCGTGAATCTGCTCCCGAAGATGTTGGCGAGCCGT
TGGTTTTGATCAACGATACTTTGGATGACGGCAATATTAAAGGCTTGGAAGAGTCCGAACGTATTCAACGCGCCGAGGCA
GCCAAACGTGAAGCTGCGGAGCGCCGAGCCGAAGAACGCCGCCAACGTCAGGCTGAACAACGTGCTGCTGCCGCCCGTAA
AACACAAGCCCAACAGGAAGCTGCTGAGAAAGAAAACGCATTGGCAGCTAAAAAACGCGTACTTCAAGCGCGTGCTGAGA
AAGCAGAACGTGAAGCCGCTGCCGAACGCAATAAATTGGCACAATTGGAAAAAGCAGAGAAAGCCATTGCCGAGCGTAAA
TCTGCCAAAAACAGCAAAGACAGCGTAAAAGACAAGGCCGAGCCTGCCAAGAAAGCAGAAGCCAAAGTTGAAAAACCAAA
AAATGAAAAAGCTAAACAGGAAACGGCCAAAGCAGAAAAAGCCGATAAGGTAAAAACTGCCGAGAAGCCGTCTGAAAAAG
CCAAACCTAAAGCTGAAAAAGAAACAGCAGAAGCCAAACCTGCGAAAAAAGCCGCTATTCAAGCTGGTTATGCTGAAAAA
GAACGTGCGCAAAGCCTGCAACGTAAAATGAAAGCCGCAGGTATCGATTCGACCATCACTGAAGTGATGACCGATAAAGG
TAAGGTGTATCGCGTGAAATCAGCCAGTTATAAAAATGCACGCGATGCAGAGCGCGATTTGAACAAATTGCGTGTACATG
GCATTGCCGGTCAGGTGACCAGTGAGTAA

Domains


Predicted by InterproScan.

(309-380)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB C0EL18

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

48.628

100

0.51


Multiple sequence alignment