Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   FAH67_RS05270 Genome accession   NZ_CP039886
Coordinates   1013302..1016958 (+) Length   1218 a.a.
NCBI ID   WP_112890805.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1008302..1021958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS05240 (FAH67_05240) - 1008565..1009653 (-) 1089 WP_003682419.1 metallophosphoesterase -
  FAH67_RS05245 (FAH67_05245) - 1009757..1010665 (+) 909 WP_003682417.1 Dyp-type peroxidase -
  FAH67_RS11780 (FAH67_05250) - 1010754..1011236 (-) 483 WP_112890803.1 transposase -
  FAH67_RS11785 (FAH67_05255) - 1011254..1011517 (-) 264 WP_081462562.1 transposase -
  FAH67_RS05260 (FAH67_05260) - 1011779..1012504 (+) 726 Protein_1003 opacity family porin -
  FAH67_RS12250 - 1013023..1013157 (+) 135 WP_279632950.1 hypothetical protein -
  FAH67_RS05270 (FAH67_05270) recB 1013302..1016958 (+) 3657 WP_112890805.1 exodeoxyribonuclease V subunit beta Machinery gene
  FAH67_RS05275 (FAH67_05275) dinB 1017097..1018155 (-) 1059 WP_004464167.1 DNA polymerase IV -
  FAH67_RS05280 (FAH67_05280) - 1018233..1019282 (-) 1050 WP_172459155.1 sulfate ABC transporter substrate-binding protein -
  FAH67_RS05285 (FAH67_05285) - 1019673..1020509 (+) 837 WP_039863621.1 DUF4198 domain-containing protein -

Sequence

Protein


Download         Length: 1218 a.a.        Molecular weight: 138209.10 Da        Isoelectric Point: 5.3815

>NTDB_id=360896 FAH67_RS05270 WP_112890805.1 1013302..1016958(+) (recB) [Neisseria flavescens strain ATCC 13120]
MSSALPFDALTLSIDGTNLIEASAGTGKTYGIAALFTRLIVLEKKDIEKILVVTFTKAATAELKTRLRARLDEVLQVLNE
IQTLGGKPEHISDGLNKYYEKEKKSPDDFLNRLIPLALGEQDGQESCHRLILRLKAALSQFDNASIYTIHGFCQRVLRDY
AFLCGAPLDVELSDDSRERLLIPAQDFWRQKVATDATLAQLVFDRKCTPEEILAEIKSYTGRPYLKFRRPEGNLKEAQAN
LQETWQKVCGQLEDLEKAFWAIFPKLNGQTYKRNTFENVFTDLKTNAESNRLPRLSKETLKKLSLFSVDTLNSKLKKEYK
ADADAPEIIQLQALANLGRDLQAMESAEEAVFICLQLDLLSYINQSITEQKKSRRERVFDDLLLDVHQALTTNEHGNALA
KAAAANWEIALIDEFQDTDPLQYEIFRQIFIEQGCPLFLVGDPKQAIYSFRGADIYAYLQAAQDADRHYTLAVNYRSHAK
LINGISALFKQKKHPFVLENIDYSDVSASRAESRLSPHRPAIQVRWLNTDDQTGKEILRGRAAEYCADEIAFALNEAAEG
RLNFKGRALESGDIAVLVRTNNEAAMIAGKLKQRRIQSVLLSRQSVFDSAEADSLSALIGFWLNPRQTDWLRFVLTGVLF
GYTAKEIYELNHNEHQLLKWLESSAEAMEKWRKGGIFAAVQQFAAQHDIETRLLKGGNERSLTNYYQILELLAEEDSQSR
NPAALHKWLNEQISRARSGHFPSDAQTIRLESDEKLVKIVTMHASKGLQYPLVYCPFAWDTKDNSKENWKILHTENHETE
LLATSQTSEAELSHLADEKTAEDLRLLYVALTRAEEQLNIYAAANKNCTPNNPFAYLLEGLPDADRESVNQSYKSATDVV
EMLKTNWQRFITNAPENTEFAFTEETPQETVYQYSRQQDQALSAHTIKRRDFDFIRHTSFTGLSRHTKSTDEQHEPLQPA
IDPAESADRAMPSENLPSPLSDGLDIHHFPRGTNAGVCLHEMLEKLDFAASAESQSEMIAEVLQRHSFEDKWLPTVSAML
DTCRLTPLINESLSQIPPTRRLPEMGFTLYMDDFKLDDLRRWFASSEANLPPECVQAAQLLDFHDLQGYLNGFIDMVCQD
SDGNVVLIDYKSNHLGNDASAYTQQAMNEAVAHHHYYLQALIYAVAITRYYALRGKPLSKIAIRYLFLRGMDGSDQGIWK
WDIDTALLSTFVERKTNS

Nucleotide


Download         Length: 3657 bp        

>NTDB_id=360896 FAH67_RS05270 WP_112890805.1 1013302..1016958(+) (recB) [Neisseria flavescens strain ATCC 13120]
ATGTCTTCCGCCCTTCCTTTTGACGCGCTTACACTTTCCATCGACGGCACCAACCTCATCGAAGCTTCTGCCGGTACGGG
TAAAACCTACGGCATTGCCGCGCTCTTTACCCGACTGATTGTTTTAGAAAAAAAAGACATCGAGAAAATTCTGGTCGTTA
CCTTTACCAAAGCGGCGACGGCAGAACTGAAAACCCGTTTGCGCGCGCGTTTGGACGAAGTGTTGCAGGTTTTGAACGAA
ATCCAAACCTTGGGCGGCAAGCCGGAACATATTTCAGACGGCCTGAACAAATATTACGAAAAAGAGAAAAAATCCCCCGA
TGACTTTCTCAATCGTTTAATTCCTTTGGCTTTAGGCGAGCAAGACGGACAAGAAAGCTGCCATCGCCTGATTCTCCGCC
TCAAAGCCGCGCTGAGCCAGTTTGACAACGCATCGATTTACACCATCCACGGCTTCTGTCAGCGCGTCTTGCGCGATTAC
GCGTTTTTGTGCGGCGCGCCTTTGGATGTCGAGCTGTCGGACGACTCGCGCGAGAGGCTGCTGATTCCTGCGCAGGATTT
TTGGCGGCAGAAAGTGGCAACCGATGCCACATTGGCACAATTGGTTTTTGACCGGAAATGCACGCCTGAAGAAATACTTG
CCGAAATCAAAAGCTATACCGGCCGCCCCTATCTGAAATTCAGACGGCCTGAAGGCAATTTGAAAGAAGCCCAAGCCAAC
CTTCAAGAAACATGGCAAAAAGTTTGCGGTCAGTTGGAAGACTTGGAAAAAGCGTTTTGGGCAATCTTCCCCAAACTTAA
CGGCCAGACCTACAAAAGAAATACCTTTGAAAATGTTTTTACCGATTTAAAAACAAACGCCGAATCCAACCGTCTGCCCC
GCCTGAGCAAAGAAACGCTAAAAAAATTAAGCCTCTTCAGTGTCGATACACTCAACAGCAAACTGAAAAAAGAATATAAA
GCCGATGCCGATGCGCCGGAAATTATTCAGCTGCAAGCCTTGGCCAATCTCGGTCGTGATTTGCAGGCAATGGAAAGCGC
GGAAGAAGCAGTCTTCATCTGCCTGCAACTCGATCTCCTTTCCTACATCAACCAATCCATTACCGAACAAAAAAAATCAC
GCCGCGAGCGCGTGTTTGACGATTTGCTGCTGGATGTCCATCAGGCATTGACCACCAATGAACACGGCAACGCATTGGCA
AAAGCGGCGGCGGCAAACTGGGAAATCGCGCTGATTGACGAATTCCAAGATACCGACCCGCTGCAATACGAAATTTTCCG
CCAAATTTTTATCGAACAAGGCTGCCCGCTGTTTCTCGTTGGCGACCCCAAACAGGCGATTTACAGCTTTCGAGGTGCGG
ACATTTACGCCTATCTGCAAGCCGCGCAAGATGCGGACAGGCATTACACCCTCGCCGTCAACTACCGCAGCCATGCCAAG
CTGATTAACGGCATCAGCGCCTTGTTCAAACAAAAAAAACACCCCTTCGTGTTGGAAAACATCGATTACAGCGATGTCTC
CGCCAGCCGTGCCGAAAGCCGGCTGTCGCCACACCGCCCCGCCATCCAAGTACGCTGGCTCAATACGGACGATCAAACCG
GCAAAGAGATTTTGCGCGGCCGTGCCGCCGAATATTGCGCCGATGAAATTGCCTTTGCGCTCAATGAAGCAGCCGAAGGC
CGTCTGAACTTCAAAGGCCGTGCATTGGAATCCGGCGATATTGCCGTCTTGGTGCGCACCAACAACGAAGCGGCGATGAT
TGCCGGAAAACTGAAACAGCGCCGTATCCAAAGCGTGTTGCTGTCGCGCCAGTCCGTTTTCGACTCCGCCGAGGCAGACT
CGCTGTCCGCGCTGATCGGCTTTTGGCTCAACCCAAGGCAAACCGACTGGCTGCGCTTTGTCTTGACCGGCGTTTTGTTC
GGCTATACCGCCAAAGAGATTTACGAACTTAACCACAACGAACACCAGCTGCTGAAATGGCTGGAGTCATCTGCCGAGGC
CATGGAAAAATGGCGGAAAGGCGGCATTTTTGCCGCCGTGCAGCAGTTTGCCGCCCAACATGACATCGAAACACGCCTGC
TCAAAGGCGGCAACGAACGCAGCCTGACCAACTACTACCAAATTCTGGAGCTTTTGGCCGAAGAAGACAGCCAAAGCCGC
AACCCTGCCGCCCTGCATAAATGGTTAAACGAACAAATCAGCCGTGCGCGCAGCGGCCATTTCCCGTCAGACGCGCAAAC
CATCCGTCTTGAAAGCGACGAAAAATTGGTCAAAATCGTTACCATGCACGCATCGAAAGGTTTGCAATATCCTTTGGTGT
ACTGCCCCTTCGCGTGGGATACCAAAGACAATTCCAAAGAAAACTGGAAAATCCTGCATACCGAAAACCACGAAACCGAG
CTGCTGGCAACATCGCAAACCTCGGAAGCAGAACTAAGCCACCTTGCCGATGAAAAGACGGCAGAAGATTTGCGTCTGCT
CTATGTCGCCCTTACCCGCGCCGAAGAACAGCTCAACATCTACGCCGCCGCCAACAAAAACTGTACGCCAAACAATCCTT
TTGCCTATCTGCTCGAAGGTTTGCCGGATGCTGACCGCGAAAGCGTCAACCAAAGCTATAAAAGCGCGACAGACGTTGTG
GAAATGCTCAAAACCAACTGGCAACGCTTTATTACAAACGCGCCTGAAAATACGGAGTTTGCCTTCACGGAAGAAACCCC
GCAGGAAACCGTCTACCAATACAGCCGCCAACAAGACCAAGCCTTGAGCGCACATACCATCAAACGCCGCGATTTTGACT
TTATCCGCCACACCAGCTTTACCGGTTTGAGCCGGCACACCAAGTCAACCGACGAACAACACGAGCCTTTGCAACCTGCC
ATCGACCCGGCAGAAAGCGCAGACCGTGCCATGCCGTCTGAAAACCTGCCGTCCCCACTTTCAGACGGCCTCGATATCCA
CCATTTCCCCCGAGGCACCAATGCCGGCGTATGTTTGCATGAAATGTTGGAAAAACTCGACTTCGCCGCTTCTGCCGAGA
GCCAATCCGAAATGATTGCCGAAGTTTTGCAACGCCACAGCTTTGAAGACAAATGGCTGCCGACGGTAAGCGCCATGCTC
GACACCTGCCGCCTGACGCCTTTAATCAACGAGAGCCTATCGCAGATTCCGCCGACCCGACGCCTGCCCGAAATGGGGTT
TACCCTGTACATGGACGATTTCAAACTGGACGACTTGCGCCGTTGGTTTGCCTCAAGCGAAGCAAACCTGCCGCCTGAAT
GCGTCCAAGCCGCGCAACTGCTTGATTTCCATGATTTGCAAGGTTATTTAAACGGCTTCATCGATATGGTTTGCCAAGAT
TCAGACGGCAATGTCGTTTTAATCGACTATAAATCCAACCATTTGGGCAACGATGCAAGCGCCTACACGCAACAGGCGAT
GAACGAAGCCGTAGCGCATCATCACTACTACCTGCAAGCCCTGATCTACGCCGTCGCCATCACGCGCTACTACGCCCTGC
GCGGCAAGCCGTTGTCCAAAATCGCCATCCGCTACCTATTCCTGCGCGGCATGGACGGATCGGATCAAGGCATTTGGAAA
TGGGACATCGATACCGCCCTGCTTTCCACTTTCGTTGAGCGAAAAACAAATTCTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(469-842)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(995-1190)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(13-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

60.315

99.097

0.598

Multiple sequence alignment