Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   GVI48_RS21815 Genome accession   NZ_CP047697
Coordinates   4706273..4706629 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4701273..4711629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS21790 - 4701656..4702288 (-) 633 WP_003091112.1 DUF4823 domain-containing protein -
  GVI48_RS21795 - 4702353..4703249 (-) 897 WP_003091113.1 radical SAM protein -
  GVI48_RS21800 - 4703399..4704037 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  GVI48_RS21805 - 4704123..4705256 (+) 1134 WP_003118082.1 aminotransferase class V-fold PLP-dependent enzyme -
  GVI48_RS21810 - 4705482..4706258 (-) 777 WP_003091117.1 TatD family hydrolase -
  GVI48_RS21815 pilZ 4706273..4706629 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  GVI48_RS21820 - 4706663..4707649 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  GVI48_RS21825 tmk 4707642..4708274 (-) 633 WP_003091125.1 dTMP kinase -
  GVI48_RS21830 mltG 4708303..4709352 (-) 1050 WP_003104128.1 endolytic transglycosylase MltG -
  GVI48_RS21835 pabC 4709358..4710173 (-) 816 WP_034054334.1 aminodeoxychorismate lyase -
  GVI48_RS21840 fabF 4710173..4711417 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=360892 GVI48_RS21815 WP_003091119.1 4706273..4706629(-) (pilZ) [Pseudomonas aeruginosa strain RD1-3]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=360892 GVI48_RS21815 WP_003091119.1 4706273..4706629(-) (pilZ) [Pseudomonas aeruginosa strain RD1-3]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449