Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GVI48_RS13620 Genome accession   NZ_CP047697
Coordinates   2918812..2919408 (+) Length   198 a.a.
NCBI ID   WP_003159976.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2913812..2924408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS29890 - 2915017..2915139 (-) 123 WP_023090669.1 hypothetical protein -
  GVI48_RS13605 - 2915389..2916255 (-) 867 WP_023657576.1 substrate-binding periplasmic protein -
  GVI48_RS13610 dnaX 2916292..2918361 (+) 2070 WP_034048728.1 DNA polymerase III subunit gamma/tau -
  GVI48_RS13615 - 2918407..2918733 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  GVI48_RS13620 recR 2918812..2919408 (+) 597 WP_003159976.1 recombination mediator RecR Machinery gene
  GVI48_RS13625 - 2919531..2920679 (+) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  GVI48_RS13630 - 2920692..2921231 (-) 540 WP_003103931.1 CbrC family protein -
  GVI48_RS13635 - 2921305..2922192 (-) 888 WP_023122609.1 SDR family NAD(P)-dependent oxidoreductase -
  GVI48_RS13640 - 2922189..2923772 (-) 1584 WP_079385675.1 flavin-containing monooxygenase -
  GVI48_RS29810 - 2923895..2924014 (+) 120 Protein_2684 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.44 Da        Isoelectric Point: 6.0063

>NTDB_id=360874 GVI48_RS13620 WP_003159976.1 2918812..2919408(+) (recR) [Pseudomonas aeruginosa strain RD1-3]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLRLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=360874 GVI48_RS13620 WP_003159976.1 2918812..2919408(+) (recR) [Pseudomonas aeruginosa strain RD1-3]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAGGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGTGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.744

100

0.49
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48