Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GVI48_RS08920 Genome accession   NZ_CP047697
Coordinates   1924159..1925601 (+) Length   480 a.a.
NCBI ID   WP_009878058.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1919159..1930601
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS08900 - 1919827..1921398 (-) 1572 WP_003141220.1 DUF4129 domain-containing protein -
  GVI48_RS08905 - 1921385..1922365 (-) 981 WP_003093893.1 stage II sporulation protein M -
  GVI48_RS08910 - 1922362..1923159 (-) 798 WP_003134638.1 RDD family protein -
  GVI48_RS08915 - 1923197..1923934 (-) 738 WP_023090822.1 hypothetical protein -
  GVI48_RS08920 sbcB 1924159..1925601 (+) 1443 WP_009878058.1 exodeoxyribonuclease I Machinery gene
  GVI48_RS08925 mvaT 1925686..1926060 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  GVI48_RS08930 purU 1926320..1927171 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  GVI48_RS08935 - 1927221..1927433 (+) 213 WP_003093886.1 hypothetical protein -
  GVI48_RS08940 - 1927408..1928409 (-) 1002 WP_016852096.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GVI48_RS08945 - 1928406..1929167 (-) 762 WP_023090821.1 DUF2334 domain-containing protein -
  GVI48_RS08950 - 1929160..1930275 (-) 1116 WP_003101181.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55535.80 Da        Isoelectric Point: 5.4194

>NTDB_id=360863 GVI48_RS08920 WP_009878058.1 1924159..1925601(+) (sbcB) [Pseudomonas aeruginosa strain RD1-3]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVDERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=360863 GVI48_RS08920 WP_009878058.1 1924159..1925601(+) (sbcB) [Pseudomonas aeruginosa strain RD1-3]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCACGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGACGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44