Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GVI48_RS02075 Genome accession   NZ_CP047697
Coordinates   444290..444655 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain RD1-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 439290..449655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI48_RS02045 pyrR 439913..440425 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  GVI48_RS02050 ruvX 440537..440971 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  GVI48_RS02055 - 440971..441540 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  GVI48_RS02060 - 441589..442482 (-) 894 WP_003160914.1 energy transducer TonB -
  GVI48_RS02065 gshB 442629..443582 (-) 954 WP_003100943.1 glutathione synthase -
  GVI48_RS02070 pilG 443836..444243 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  GVI48_RS02075 pilH 444290..444655 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  GVI48_RS02080 - 444706..445242 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  GVI48_RS02085 pilJ 445327..447375 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  GVI48_RS02090 pilK 447436..448311 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=360823 GVI48_RS02075 WP_003084587.1 444290..444655(+) (pilH) [Pseudomonas aeruginosa strain RD1-3]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=360823 GVI48_RS02075 WP_003084587.1 444290..444655(+) (pilH) [Pseudomonas aeruginosa strain RD1-3]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364

Multiple sequence alignment