Detailed information NTG0360765

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GUU86_RS09885
• Genome accession: NZ_CP047665
• Coordinates: 2054841..2055833 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LD26-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2049841..2060833

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GUU86_RS09860 (GUU86_09860)	ygbN	2050496..2051860 (+)	1365	WP_000104439.1	GntP family transporter	-
GUU86_RS09865 (GUU86_09865)	-	2051899..2052135 (-)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
GUU86_RS09870 (GUU86_09870)	-	2052146..2053573 (-)	1428	WP_000863223.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
GUU86_RS09875 (GUU86_09875)	-	2053573..2054166 (-)	594	WP_000767707.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
GUU86_RS09880 (GUU86_09880)	-	2054313..2054720 (+)	408	WP_001208070.1	MarR family transcriptional regulator	-
GUU86_RS09885 (GUU86_09885)	rpoS	2054841..2055833 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GUU86_RS09890 (GUU86_09890)	nlpD	2055896..2056990 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GUU86_RS09895 (GUU86_09895)	pcm	2057175..2057801 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GUU86_RS09900 (GUU86_09900)	surE	2057795..2058556 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GUU86_RS09905 (GUU86_09905)	truD	2058537..2059586 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GUU86_RS09910 (GUU86_09910)	ispF	2059583..2060062 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GUU86_RS09915 (GUU86_09915)	ispD	2060062..2060772 (-)	711	WP_000246136.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=360765 GUU86_RS09885 WP_000081550.1 2054841..2055833(-) (rpoS) [Escherichia coli strain LD26-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=360765 GUU86_RS09885 WP_000081550.1 2054841..2055833(-) (rpoS) [Escherichia coli strain LD26-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715