Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GUU86_RS06440 Genome accession   NZ_CP047665
Coordinates   1312857..1314284 (+) Length   475 a.a.
NCBI ID   WP_001471732.1    Uniprot ID   -
Organism   Escherichia coli strain LD26-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1307857..1319284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU86_RS06405 (GUU86_06405) yeeW 1308041..1308235 (+) 195 WP_000988600.1 DUF5983 family protein -
  GUU86_RS24950 - 1308281..1308361 (+) 81 Protein_1282 hypothetical protein -
  GUU86_RS06410 (GUU86_06410) - 1308650..1308796 (-) 147 Protein_1283 transposase domain-containing protein -
  GUU86_RS06415 (GUU86_06415) - 1308847..1309032 (+) 186 Protein_1284 EutP/PduV family microcompartment system protein -
  GUU86_RS06420 (GUU86_06420) tmaR 1309133..1309462 (-) 330 WP_001374017.1 DUF496 family protein -
  GUU86_RS06425 (GUU86_06425) yeeA 1309634..1310692 (-) 1059 WP_001200890.1 FUSC family protein -
  GUU86_RS06430 (GUU86_06430) sbmC 1310890..1311363 (-) 474 WP_001471730.1 DNA gyrase inhibitor SbmC -
  GUU86_RS06435 (GUU86_06435) dacD 1311482..1312648 (-) 1167 WP_001374019.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GUU86_RS06440 (GUU86_06440) sbcB 1312857..1314284 (+) 1428 WP_001471732.1 exodeoxyribonuclease I Machinery gene
  GUU86_RS06445 (GUU86_06445) plaP 1314358..1315716 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GUU86_RS06450 (GUU86_06450) yoeI 1315706..1315768 (-) 63 WP_010723108.1 membrane protein YoeI -
  GUU86_RS06455 (GUU86_06455) yeeY 1315983..1316912 (-) 930 WP_001374016.1 LysR substrate-binding domain-containing protein -
  GUU86_RS06460 (GUU86_06460) yeeZ 1316958..1317782 (-) 825 WP_160183908.1 SDR family oxidoreductase -
  GUU86_RS06465 (GUU86_06465) yoeB 1317865..1318119 (-) 255 WP_001471733.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  GUU86_RS06470 (GUU86_06470) yefM 1318116..1318367 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54497.81 Da        Isoelectric Point: 5.4700

>NTDB_id=360753 GUU86_RS06440 WP_001471732.1 1312857..1314284(+) (sbcB) [Escherichia coli strain LD26-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQVYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=360753 GUU86_RS06440 WP_001471732.1 1312857..1314284(+) (sbcB) [Escherichia coli strain LD26-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAGGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGTCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581