Detailed information NTG0360706

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GUU84_RS16935
• Genome accession: NZ_CP047662
• Coordinates: 3574033..3575025 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LD93-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3569033..3580025

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GUU84_RS16915 (GUU84_16915)	otnK	3569808..3571070 (+)	1263	WP_160188247.1	3-oxo-tetronate kinase	-
GUU84_RS16920 (GUU84_16920)	ygbL	3571067..3571705 (+)	639	WP_001278994.1	aldolase	-
GUU84_RS16925 (GUU84_16925)	ygbM	3571710..3572486 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
GUU84_RS16930 (GUU84_16930)	ygbN	3572575..3573939 (+)	1365	WP_000104441.1	GntP family transporter	-
GUU84_RS16935 (GUU84_16935)	rpoS	3574033..3575025 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GUU84_RS16940 (GUU84_16940)	nlpD	3575088..3576182 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
GUU84_RS16945 (GUU84_16945)	pcm	3576367..3576993 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GUU84_RS16950 (GUU84_16950)	surE	3576987..3577748 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GUU84_RS16955 (GUU84_16955)	truD	3577729..3578778 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
GUU84_RS16960 (GUU84_16960)	ispF	3578775..3579254 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GUU84_RS16965 (GUU84_16965)	ispD	3579254..3579964 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=360706 GUU84_RS16935 WP_000081550.1 3574033..3575025(-) (rpoS) [Escherichia coli strain LD93-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=360706 GUU84_RS16935 WP_000081550.1 3574033..3575025(-) (rpoS) [Escherichia coli strain LD93-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715