Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   GUU84_RS16655 Genome accession   NZ_CP047662
Coordinates   3521692..3522207 (-) Length   171 a.a.
NCBI ID   WP_160188245.1    Uniprot ID   -
Organism   Escherichia coli strain LD93-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3516692..3527207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU84_RS16630 (GUU84_16630) ygaZ 3517091..3517828 (+) 738 WP_000445661.1 L-valine exporter subunit YgaZ -
  GUU84_RS16635 (GUU84_16635) ygaH 3517818..3518153 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  GUU84_RS16640 (GUU84_16640) emrR 3518244..3518774 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  GUU84_RS16645 (GUU84_16645) emrA 3518901..3520073 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  GUU84_RS16650 (GUU84_16650) emrB 3520090..3521628 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  GUU84_RS16655 (GUU84_16655) luxS 3521692..3522207 (-) 516 WP_160188245.1 S-ribosylhomocysteine lyase Regulator
  GUU84_RS16660 (GUU84_16660) gshA 3522357..3523913 (-) 1557 WP_000611812.1 glutamate--cysteine ligase -
  GUU84_RS16665 (GUU84_16665) yqaA 3523986..3524414 (-) 429 WP_001287454.1 YqaA family protein -
  GUU84_RS16670 (GUU84_16670) yqaB 3524411..3524977 (-) 567 WP_160188246.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  GUU84_RS16700 (GUU84_16700) csrA 3526435..3526620 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19363.14 Da        Isoelectric Point: 4.8676

>NTDB_id=360703 GUU84_RS16655 WP_160188245.1 3521692..3522207(-) (luxS) [Escherichia coli strain LD93-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIACSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=360703 GUU84_RS16655 WP_160188245.1 3521692..3522207(-) (luxS) [Escherichia coli strain LD93-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCACAGGATATTGCGTGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731