Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GUU84_RS13550 Genome accession   NZ_CP047662
Coordinates   2834789..2836216 (+) Length   475 a.a.
NCBI ID   WP_000980612.1    Uniprot ID   -
Organism   Escherichia coli strain LD93-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2829789..2841216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU84_RS13520 (GUU84_13520) - 2830349..2830708 (-) 360 WP_032160190.1 hypothetical protein -
  GUU84_RS13525 (GUU84_13525) - 2830687..2830983 (+) 297 Protein_2681 EutP/PduV family microcompartment system protein -
  GUU84_RS13530 (GUU84_13530) tmaR 2831084..2831413 (-) 330 WP_000450409.1 DUF496 family protein -
  GUU84_RS13535 (GUU84_13535) yeeA 2831585..2832643 (-) 1059 WP_001200891.1 FUSC family protein -
  GUU84_RS13540 (GUU84_13540) sbmC 2832842..2833315 (-) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  GUU84_RS13545 (GUU84_13545) dacD 2833434..2834600 (-) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  GUU84_RS13550 (GUU84_13550) sbcB 2834789..2836216 (+) 1428 WP_000980612.1 exodeoxyribonuclease I Machinery gene
  GUU84_RS13555 (GUU84_13555) tsuB 2836259..2836486 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GUU84_RS13560 (GUU84_13560) tsuA 2836500..2837558 (-) 1059 WP_000492310.1 thiosulfate utilization transporter TsuA/YeeE -
  GUU84_RS13565 (GUU84_13565) plaP 2837737..2839095 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GUU84_RS13570 (GUU84_13570) yoeI 2839085..2839147 (-) 63 WP_010723108.1 membrane protein YoeI -
  GUU84_RS13575 (GUU84_13575) yeeY 2839362..2840291 (-) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  GUU84_RS13580 (GUU84_13580) yeeZ 2840337..2841161 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54486.75 Da        Isoelectric Point: 5.4700

>NTDB_id=360693 GUU84_RS13550 WP_000980612.1 2834789..2836216(+) (sbcB) [Escherichia coli strain LD93-1]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLRILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=360693 GUU84_RS13550 WP_000980612.1 2834789..2836216(+) (sbcB) [Escherichia coli strain LD93-1]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAGAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583