Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GUU82_RS16985 Genome accession   NZ_CP047658
Coordinates   3509993..3510598 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain LD39-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3504993..3515598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU82_RS16965 (GUU82_16970) aes 3505030..3505989 (+) 960 WP_000801865.1 acetyl esterase -
  GUU82_RS16970 (GUU82_16975) hemH 3505986..3506948 (-) 963 WP_001250117.1 ferrochelatase -
  GUU82_RS16975 (GUU82_16980) adk 3507184..3507828 (-) 645 WP_001220233.1 adenylate kinase -
  GUU82_RS16980 (GUU82_16985) htpG 3508009..3509883 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  GUU82_RS16985 (GUU82_16990) recR 3509993..3510598 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  GUU82_RS16990 (GUU82_16995) ybaB 3510598..3510927 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  GUU82_RS16995 (GUU82_17000) dnaX 3510980..3512911 (-) 1932 WP_000122010.1 DNA polymerase III subunit gamma/tau -
  GUU82_RS17000 (GUU82_17005) apt 3513040..3513591 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  GUU82_RS17005 (GUU82_17010) ybaN 3513744..3514121 (-) 378 WP_001188905.1 DUF454 family protein -
  GUU82_RS17010 (GUU82_17015) priC 3514191..3514718 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  GUU82_RS17015 (GUU82_17020) rsmS 3514732..3514893 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  GUU82_RS25400 - 3514946..3515044 (-) 99 Protein_3377 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=360628 GUU82_RS16985 WP_001195025.1 3509993..3510598(-) (recR) [Escherichia coli strain LD39-1]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=360628 GUU82_RS16985 WP_001195025.1 3509993..3510598(-) (recR) [Escherichia coli strain LD39-1]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443