Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GUU82_RS08630 Genome accession   NZ_CP047658
Coordinates   1838125..1839549 (-) Length   474 a.a.
NCBI ID   WP_160183231.1    Uniprot ID   -
Organism   Escherichia coli strain LD39-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833125..1844549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GUU82_RS08600 (GUU82_08600) yeeZ 1833180..1834004 (+) 825 WP_032175485.1 SDR family oxidoreductase -
  GUU82_RS08605 (GUU82_08605) yeeY 1834050..1834979 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  GUU82_RS08610 (GUU82_08610) yoeI 1835194..1835256 (+) 63 WP_010723108.1 membrane protein YoeI -
  GUU82_RS08615 (GUU82_08615) plaP 1835246..1836604 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  GUU82_RS08620 (GUU82_08620) tsuA 1836783..1837841 (+) 1059 WP_112022311.1 thiosulfate utilization transporter TsuA/YeeE -
  GUU82_RS08625 (GUU82_08625) tsuB 1837855..1838082 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  GUU82_RS08630 (GUU82_08630) sbcB 1838125..1839549 (-) 1425 WP_160183231.1 exodeoxyribonuclease I Machinery gene
  GUU82_RS08635 (GUU82_08635) - 1839731..1840909 (+) 1179 WP_108188948.1 site-specific integrase -
  GUU82_RS08640 (GUU82_08640) - 1840890..1841081 (-) 192 WP_000132739.1 AlpA family phage regulatory protein -
  GUU82_RS08645 (GUU82_08645) - 1841186..1841365 (-) 180 WP_001277770.1 Eag protein -
  GUU82_RS25005 - 1841462..1841692 (-) 231 Protein_1708 DUF551 domain-containing protein -
  GUU82_RS25010 - 1841786..1842031 (-) 246 Protein_1709 ead/Ea22-like family protein -
  GUU82_RS08655 (GUU82_08655) - 1842033..1842332 (-) 300 WP_160183233.1 hypothetical protein -
  GUU82_RS08660 (GUU82_08660) - 1842329..1842496 (-) 168 WP_001214454.1 DUF2737 family protein -
  GUU82_RS08665 (GUU82_08665) - 1842507..1842800 (-) 294 WP_001111278.1 phage anti-RecBCD protein -
  GUU82_RS08670 (GUU82_08670) - 1842824..1843207 (-) 384 WP_000951325.1 hypothetical protein -
  GUU82_RS08675 (GUU82_08675) - 1843207..1843812 (-) 606 WP_085445097.1 ERF family protein -
  GUU82_RS24660 - 1843823..1843993 (-) 171 WP_000050554.1 hypothetical protein -
  GUU82_RS08680 (GUU82_08680) kil 1844069..1844221 (-) 153 WP_097479754.1 host cell division inhibitory peptide Kil -
  GUU82_RS08685 (GUU82_08685) - 1844206..1844331 (-) 126 WP_016042219.1 protease FtsH-inhibitory lysogeny factor CIII -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54412.64 Da        Isoelectric Point: 5.3476

>NTDB_id=360608 GUU82_RS08630 WP_160183231.1 1838125..1839549(-) (sbcB) [Escherichia coli strain LD39-1]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
ATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRTCYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=360608 GUU82_RS08630 WP_160183231.1 1838125..1839549(-) (sbcB) [Escherichia coli strain LD39-1]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTACCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
TGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGTATG
CCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584