Detailed information NTG0360595

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GUU82_RS05215
• Genome accession: NZ_CP047658
• Coordinates: 1091020..1092012 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain LD39-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1086020..1097012

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GUU82_RS05185 (GUU82_05185)	ispD	1086081..1086791 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
GUU82_RS05190 (GUU82_05190)	ispF	1086791..1087270 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GUU82_RS05195 (GUU82_05195)	truD	1087267..1088316 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
GUU82_RS05200 (GUU82_05200)	surE	1088297..1089058 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
GUU82_RS05205 (GUU82_05205)	pcm	1089052..1089678 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
GUU82_RS05210 (GUU82_05210)	nlpD	1089863..1090957 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
GUU82_RS05215 (GUU82_05215)	rpoS	1091020..1092012 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
GUU82_RS05220 (GUU82_05220)	ygbN	1092106..1093470 (-)	1365	WP_000104459.1	GntP family transporter	-
GUU82_RS05225 (GUU82_05225)	ygbM	1093559..1094335 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
GUU82_RS05230 (GUU82_05230)	ygbL	1094340..1094978 (-)	639	WP_001278994.1	aldolase	-
GUU82_RS05235 (GUU82_05235)	otnK	1094975..1096237 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=360595 GUU82_RS05215 WP_000081550.1 1091020..1092012(+) (rpoS) [Escherichia coli strain LD39-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=360595 GUU82_RS05215 WP_000081550.1 1091020..1092012(+) (rpoS) [Escherichia coli strain LD39-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715