Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   FAZ25_RS01260 Genome accession   NZ_CP039736
Coordinates   245282..247069 (-) Length   595 a.a.
NCBI ID   WP_036060955.1    Uniprot ID   -
Organism   Leuconostoc sp. LN180020     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 240282..252069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ25_RS01230 (FAZ25_01215) - 240497..240880 (-) 384 WP_004907397.1 VOC family protein -
  FAZ25_RS01235 (FAZ25_01220) - 240946..241677 (-) 732 WP_004900146.1 hypothetical protein -
  FAZ25_RS01240 (FAZ25_01225) - 241682..242698 (-) 1017 WP_004900149.1 zinc-dependent alcohol dehydrogenase family protein -
  FAZ25_RS01245 (FAZ25_01230) - 242888..243856 (+) 969 WP_040189884.1 LacI family DNA-binding transcriptional regulator -
  FAZ25_RS01250 (FAZ25_01235) - 243889..244809 (-) 921 WP_004905936.1 NAD(P)-dependent oxidoreductase -
  FAZ25_RS01255 (FAZ25_01240) - 244829..245230 (-) 402 WP_004907398.1 cytidine deaminase -
  FAZ25_RS01260 (FAZ25_01245) pepF 245282..247069 (-) 1788 WP_036060955.1 oligoendopeptidase F Regulator
  FAZ25_RS01265 (FAZ25_01250) - 247157..248194 (-) 1038 WP_040176608.1 competence protein CoiA -
  FAZ25_RS01270 (FAZ25_01255) - 248243..249682 (-) 1440 WP_004905944.1 ABC transporter substrate-binding protein/permease -
  FAZ25_RS01275 (FAZ25_01260) - 249777..250529 (-) 753 WP_004900167.1 amino acid ABC transporter ATP-binding protein -
  FAZ25_RS01280 (FAZ25_01265) - 250526..251974 (-) 1449 WP_040189883.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 595 a.a.        Molecular weight: 67704.35 Da        Isoelectric Point: 4.7054

>NTDB_id=360568 FAZ25_RS01260 WP_036060955.1 245282..247069(-) (pepF) [Leuconostoc sp. LN180020]
MPQIKRHEVPTALTWDLTTIFSSDEAWEKTFQKVHESAQNMTRFVGHVGDSADMLQAALVADLSLERLLEKVYVYAHQIY
DQDTTNQQYAAFNARVQALWAEVSEATAYFQPEVLRIPDTVLAEYLATPGLEPFSHLFDTIRLQKPHTLPVEQEALLAGA
SDIFNASENTFGVLDNSDLSFGDVHTETGELVPLTNGLYSLLLESQSRDLRQEAFDTLYDSYISFQNTFASTLSSHVKGH
NFLAKARHYDSAREAAILPHGLPTTVFETLRKSVNDHLPLLHRFVSLRRQVLGVEDVHSYDLYVPLVDDVTFDVSYDKAQ
DIVIKALAPLGEDYVRIVQRAFDERWIDVVENKGKRTGAYSSGAYDTNPFILLNWQDNLNNVYTLAHELGHSVHSYLTRH
TQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNHDPKVQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHQQAAEGEALTAD
KMSSYYGELNQKYYGPDLFPDEAIAYEWARIPHFYYNYYVYQYATGEAAATTLADRIINHDGANDYKNYLRAGASDYPLN
VIGKAGVDMSQSDYLNQAFHVFETRLNQLEKLLAN

Nucleotide


Download         Length: 1788 bp        

>NTDB_id=360568 FAZ25_RS01260 WP_036060955.1 245282..247069(-) (pepF) [Leuconostoc sp. LN180020]
ATGCCACAGATAAAGCGTCATGAAGTGCCAACAGCGTTAACATGGGATTTAACAACTATTTTTTCATCAGATGAGGCCTG
GGAAAAGACTTTTCAAAAAGTTCATGAATCAGCTCAAAATATGACGCGTTTCGTTGGGCACGTCGGTGATTCGGCTGACA
TGTTACAAGCGGCATTAGTGGCAGATTTATCGTTGGAACGTTTATTAGAGAAAGTTTACGTCTACGCCCACCAAATATAT
GATCAAGACACAACTAATCAGCAGTATGCAGCATTTAACGCTCGAGTACAGGCGCTTTGGGCTGAAGTTAGTGAAGCGAC
GGCCTATTTTCAGCCTGAAGTATTGCGTATTCCTGATACGGTATTAGCTGAGTATCTAGCAACACCTGGGTTAGAACCAT
TTAGTCATTTATTTGATACGATTCGTTTACAAAAGCCACACACACTACCTGTTGAACAAGAAGCGCTACTAGCTGGTGCT
AGTGATATTTTTAATGCGTCTGAAAATACATTTGGTGTGCTTGATAATTCAGATCTGTCTTTCGGAGATGTACATACTGA
AACAGGTGAACTGGTGCCTTTGACTAATGGTTTGTACAGTCTATTATTAGAATCGCAATCACGCGACCTACGTCAGGAAG
CATTTGATACACTCTATGACAGCTATATTAGTTTTCAAAATACTTTTGCTTCAACACTGTCATCGCATGTGAAAGGCCAT
AATTTCTTGGCGAAAGCACGACATTATGATTCAGCGCGCGAGGCCGCTATTTTACCACATGGCTTACCTACAACGGTTTT
TGAGACCCTAAGAAAATCAGTTAATGATCATTTGCCATTACTACATCGATTTGTCTCGTTACGTCGTCAAGTGTTGGGTG
TTGAAGACGTCCATAGCTATGACTTATACGTGCCCTTAGTTGATGATGTTACATTTGATGTTTCCTATGATAAGGCGCAA
GACATTGTGATTAAAGCATTAGCGCCATTGGGCGAGGATTATGTGCGTATTGTCCAGCGTGCCTTTGATGAACGTTGGAT
AGATGTTGTTGAAAACAAGGGTAAACGGACAGGAGCATACTCTAGCGGCGCGTACGATACCAATCCTTTTATTCTATTGA
ATTGGCAAGATAATTTAAATAATGTTTATACTTTAGCTCATGAGTTGGGACATTCTGTTCATTCTTATTTAACAAGACAT
ACACAACCTTATCATTACGGTGACTACCCCATTTTTTTGGCAGAAATTGCTTCTACAACGAATGAAAGTCTATTAACAGA
TTATTTACTGAAAACTAATCATGATCCTAAGGTGCAAGCTTATGTCTTGAACCAATATCTAGACGGTTTCAAAGGGACGG
TCTTTAGACAAACGCAATTTGCAGAATTTGAAGATTGGATTCATCAACAAGCTGCTGAGGGCGAGGCTCTAACGGCTGAT
AAAATGAGTAGTTATTATGGTGAATTAAATCAAAAGTATTATGGCCCAGATTTGTTTCCTGATGAGGCTATTGCGTATGA
GTGGGCACGAATTCCGCATTTTTATTACAATTACTATGTTTATCAATATGCAACAGGTGAAGCAGCTGCTACAACACTAG
CTGACCGTATTATCAATCACGATGGTGCTAATGACTACAAAAATTATTTACGTGCTGGCGCCTCTGATTATCCGCTAAAT
GTTATTGGAAAAGCTGGTGTTGATATGAGCCAGTCAGATTATCTGAACCAAGCTTTCCATGTCTTTGAAACGCGACTGAA
CCAGTTAGAAAAGTTACTCGCAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(202-579)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

99.832

0.514

Multiple sequence alignment