Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FAZ30_RS11590 Genome accession   NZ_CP039731
Coordinates   2470336..2471700 (+) Length   454 a.a.
NCBI ID   WP_137009452.1    Uniprot ID   -
Organism   Aquitalea aquatilis strain THG-DN7.12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2465336..2476700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ30_RS11565 hpnC 2465753..2466565 (+) 813 WP_124641272.1 squalene synthase HpnC -
  FAZ30_RS11570 hpnD 2466717..2467562 (+) 846 WP_124641274.1 presqualene diphosphate synthase HpnD -
  FAZ30_RS11575 hpnE 2467570..2468874 (+) 1305 WP_137009451.1 hydroxysqualene dehydroxylase HpnE -
  FAZ30_RS11580 - 2468894..2469652 (+) 759 WP_124641279.1 SDR family oxidoreductase -
  FAZ30_RS11585 - 2469709..2470314 (+) 606 WP_124641280.1 hypothetical protein -
  FAZ30_RS11590 radA 2470336..2471700 (+) 1365 WP_137009452.1 DNA repair protein RadA Machinery gene
  FAZ30_RS11595 - 2471704..2472264 (+) 561 WP_124641284.1 sigma-70 family RNA polymerase sigma factor -
  FAZ30_RS11600 - 2472261..2472440 (+) 180 WP_124641286.1 zf-HC2 domain-containing protein -
  FAZ30_RS11605 - 2472686..2473039 (-) 354 WP_124641288.1 DUF2325 domain-containing protein -
  FAZ30_RS11610 - 2473134..2473913 (-) 780 WP_137009453.1 hypothetical protein -
  FAZ30_RS11615 - 2473914..2475596 (-) 1683 WP_124641292.1 AarF/UbiB family protein -
  FAZ30_RS11620 - 2475657..2476445 (+) 789 WP_137009454.1 C40 family peptidase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48892.37 Da        Isoelectric Point: 7.3466

>NTDB_id=360550 FAZ30_RS11590 WP_137009452.1 2470336..2471700(+) (radA) [Aquitalea aquatilis strain THG-DN7.12]
MAKTKTVFSCTECGGQVPKWQGQCLHCSAWNTLVEAVSTPAASNPRFQSWSTTNARVQVLSEVKTEEVPRDPSGIDELDR
VLGGGIVRGAVILIGGDPGIGKSTLLLQALAVIGKRRKVLYVSGEESPQQIALRASRLAVDPSQVNLLAEIRLEAIQEVL
KQEQPEVAVIDSIQTLYTEQVTSAPGSVSQVRECAAQLTRMAKQTGTTILLVGHVTKEGSLAGPRVLEHMVDTVLYFEGD
AHSNYRMIRAIKNRFGAVNELGVFVMTETGLKGVSNPSAIFLSSYRDDVAGSCVLVTQEGSRPLLVEIQALVDDCHGMQP
KRLAVGLEQNRLAMLLAVLHRHGGVACFDQDVFLNAVGGVKISEPAADLAVILAMVSSLRNKPLPKKLVVFGEVGLAGEV
RPVSRGQERLKEAAKLGFSRAIVPTANKPRQPIEGLEVITVDRLEHAVDYCRGD

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=360550 FAZ30_RS11590 WP_137009452.1 2470336..2471700(+) (radA) [Aquitalea aquatilis strain THG-DN7.12]
ATGGCAAAAACCAAAACTGTTTTCAGCTGCACCGAGTGCGGCGGCCAAGTGCCGAAATGGCAGGGCCAGTGTCTCCATTG
TTCTGCCTGGAACACCCTGGTAGAAGCCGTTTCCACCCCGGCAGCCAGTAACCCGCGCTTCCAGTCCTGGTCCACCACCA
ATGCCCGGGTACAGGTGCTGTCCGAGGTCAAGACCGAAGAAGTCCCGCGCGACCCCTCCGGCATCGACGAGCTGGACCGG
GTGCTGGGTGGCGGCATCGTGCGCGGTGCGGTCATCCTGATTGGCGGTGACCCCGGCATCGGCAAATCCACCCTGCTGTT
GCAAGCGCTGGCCGTCATCGGCAAGCGGCGCAAGGTACTGTATGTGTCGGGCGAGGAATCGCCACAGCAGATCGCCCTGC
GTGCCTCGCGGCTGGCGGTTGACCCCAGCCAGGTCAACTTGCTGGCGGAAATCCGCCTGGAAGCCATTCAGGAAGTACTG
AAGCAGGAACAGCCGGAAGTCGCGGTCATCGACTCTATCCAGACCCTGTATACCGAGCAGGTGACCTCCGCCCCCGGTTC
GGTATCGCAGGTGCGTGAATGTGCCGCCCAGCTCACCCGCATGGCTAAGCAGACCGGCACCACCATCCTGCTGGTGGGCC
ATGTCACCAAGGAAGGCTCGCTGGCCGGCCCGCGCGTACTCGAACACATGGTGGACACCGTGCTGTATTTCGAGGGCGAT
GCGCACTCCAACTACCGCATGATCCGCGCCATCAAGAACCGCTTTGGCGCAGTCAATGAGCTGGGTGTGTTCGTGATGAC
CGAAACCGGCCTCAAGGGCGTGTCCAACCCCTCGGCCATCTTCCTGTCTTCCTATCGTGATGATGTGGCCGGCTCTTGCG
TGCTGGTCACGCAAGAGGGCAGCCGCCCGCTGCTGGTGGAAATCCAGGCACTGGTGGACGATTGCCATGGCATGCAGCCC
AAGCGCCTGGCGGTGGGGCTGGAGCAAAACCGCCTGGCCATGCTGCTGGCGGTACTGCATCGCCACGGTGGCGTGGCCTG
CTTTGATCAGGATGTATTCCTGAATGCGGTGGGCGGGGTCAAGATCAGCGAACCGGCAGCCGACCTGGCAGTGATCCTGG
CCATGGTGTCGTCCTTGCGTAACAAGCCCTTGCCGAAAAAGTTGGTAGTGTTTGGCGAGGTGGGGCTGGCCGGCGAAGTG
CGGCCGGTATCACGCGGGCAGGAGCGGCTGAAAGAAGCCGCCAAACTGGGCTTCAGCCGCGCCATCGTGCCCACGGCCAA
CAAGCCGCGCCAACCCATCGAAGGGCTGGAAGTGATTACCGTGGACCGGCTGGAACATGCCGTCGATTACTGTCGTGGAG
ACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-427)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.504
  radA Streptococcus mitis NCTC 12261

46.429

98.678

0.458
  radA Streptococcus mitis SK321

46.429

98.678

0.458
  radA Streptococcus pneumoniae Rx1

47.877

93.392

0.447
  radA Streptococcus pneumoniae D39

47.877

93.392

0.447
  radA Streptococcus pneumoniae R6

47.877

93.392

0.447
  radA Streptococcus pneumoniae TIGR4

47.877

93.392

0.447

Multiple sequence alignment