Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FAZ30_RS09405 Genome accession   NZ_CP039731
Coordinates   2006193..2007623 (-) Length   476 a.a.
NCBI ID   WP_124643066.1    Uniprot ID   -
Organism   Aquitalea aquatilis strain THG-DN7.12     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2001193..2012623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ30_RS09375 - 2001254..2002711 (-) 1458 WP_124643074.1 NAD(P)H-hydrate dehydratase -
  FAZ30_RS09380 - 2002715..2003335 (-) 621 WP_124643072.1 flavin prenyltransferase UbiX -
  FAZ30_RS09385 rapZ 2003442..2004284 (-) 843 WP_137009335.1 RNase adapter RapZ -
  FAZ30_RS09390 hprK 2004265..2005221 (-) 957 WP_059287117.1 HPr(Ser) kinase/phosphatase -
  FAZ30_RS09395 ptsN 2005214..2005678 (-) 465 WP_103524905.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FAZ30_RS09400 raiA 2005800..2006123 (-) 324 WP_124643068.1 ribosome-associated translation inhibitor RaiA -
  FAZ30_RS09405 rpoN/rpoN1 2006193..2007623 (-) 1431 WP_124643066.1 RNA polymerase factor sigma-54 Machinery gene
  FAZ30_RS09410 lptB 2007627..2008358 (-) 732 WP_124643064.1 LPS export ABC transporter ATP-binding protein -
  FAZ30_RS09415 lptA 2008355..2008912 (-) 558 WP_124643062.1 lipopolysaccharide transport periplasmic protein LptA -
  FAZ30_RS09420 lptC 2008902..2009462 (-) 561 WP_137009336.1 LPS export ABC transporter periplasmic protein LptC -
  FAZ30_RS09425 - 2009459..2009983 (-) 525 WP_124643058.1 HAD-IIIA family hydrolase -
  FAZ30_RS09430 - 2010012..2010992 (-) 981 WP_124643056.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 52758.63 Da        Isoelectric Point: 4.7530

>NTDB_id=360547 FAZ30_RS09405 WP_124643066.1 2006193..2007623(-) (rpoN/rpoN1) [Aquitalea aquatilis strain THG-DN7.12]
MKQSLQLRVSQQLTLTPQLQQSIKLLQLSTLDLQTEVERFLLDNPMLERGDDTPTQEGSTSTSDTPAAGEESTPASDSND
SDSNPRDDSSGELTDWGSGSRRNDGDDEFDPMLNVPCPVSLREHLLAQLGELTLPTRDQAIVQLLIEELDDNGFLSVDLE
ELASHLPLELELEADELMVGLRLLQQFDPAGIAARSLAESLCLQLDRLPPQENGHALARKIVAEHLGLLGNRDYTRLKRL
LGVDDAAIRQAQQLIARLTPHPAAGFGGEDVHYVIPDVTVRKRRGRWVAELNNGAVPRLRVNQLYAQMLSENRAGAGELS
GRLQEAKWLVKNIQQRFDTILKVSEAIVERQQAFFEHGEVAMRPLILRDIADELGLHESTVSRVTTQKYLLCPRGLFELK
YFFGSSLETDSGGECSATAIKAHIRRMIDGENTAKPLSDSAIADELGKQGMQVARRTVAKYREAMQIPPVNLRKAL

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=360547 FAZ30_RS09405 WP_124643066.1 2006193..2007623(-) (rpoN/rpoN1) [Aquitalea aquatilis strain THG-DN7.12]
ATGAAACAGTCACTACAGCTCAGGGTTTCACAGCAACTCACGCTTACCCCGCAACTGCAGCAGTCGATCAAGCTGCTGCA
GCTGTCCACCCTCGACCTGCAAACCGAAGTCGAGCGCTTCCTGCTGGACAACCCCATGCTGGAACGCGGCGACGACACCC
CGACACAAGAAGGCAGCACCAGTACCAGCGACACGCCGGCGGCCGGAGAAGAGAGCACGCCCGCCTCCGACAGCAATGAC
AGCGACAGCAACCCGCGTGACGACAGCAGCGGCGAACTCACCGACTGGGGCAGCGGCAGCCGCCGCAACGACGGCGACGA
CGAGTTCGACCCCATGCTCAACGTCCCCTGCCCGGTCAGCCTGCGCGAACATCTGCTGGCCCAGCTGGGCGAACTGACGC
TCCCCACCCGCGATCAGGCCATCGTGCAATTGCTGATCGAAGAACTGGACGACAACGGCTTTCTCAGCGTCGATCTGGAA
GAACTGGCCAGTCATTTGCCGCTGGAACTGGAGCTGGAAGCCGACGAACTGATGGTCGGCCTGCGCCTGTTGCAGCAGTT
CGATCCGGCCGGCATCGCCGCGCGCTCGCTGGCCGAATCGCTCTGCCTGCAGCTGGACCGTCTGCCACCGCAGGAAAACG
GCCATGCCCTGGCGCGCAAGATCGTGGCAGAACACCTCGGTTTGCTGGGCAATCGCGACTATACCCGGCTCAAACGCCTA
CTCGGCGTCGACGACGCCGCCATCCGCCAGGCCCAGCAACTGATCGCCCGGCTGACCCCCCATCCGGCAGCCGGTTTCGG
TGGCGAGGACGTGCACTACGTCATCCCCGATGTCACCGTGCGCAAACGCCGCGGCCGCTGGGTGGCCGAACTCAACAACG
GTGCCGTACCCCGGCTGCGGGTCAACCAGCTGTATGCCCAGATGCTGTCGGAAAACCGTGCCGGTGCAGGCGAGCTTTCC
GGCCGCCTGCAGGAAGCAAAATGGCTGGTCAAGAACATCCAGCAGCGATTTGACACTATCCTGAAAGTGTCGGAAGCTAT
AGTGGAAAGGCAGCAAGCGTTCTTTGAACACGGAGAAGTGGCCATGCGTCCGCTCATCCTGCGCGATATCGCAGACGAGC
TGGGACTGCATGAATCAACCGTTTCCCGGGTGACTACCCAGAAATACCTGCTCTGCCCGCGCGGCTTGTTCGAGCTGAAA
TATTTCTTCGGCAGTTCCCTGGAAACCGACAGTGGCGGCGAATGCTCGGCCACTGCCATCAAGGCCCATATCCGCCGCAT
GATAGACGGCGAAAATACGGCCAAGCCACTTTCTGACAGCGCCATTGCCGACGAATTGGGTAAACAGGGCATGCAGGTTG
CAAGACGTACCGTTGCGAAGTATCGTGAAGCTATGCAGATTCCACCGGTCAACCTGCGCAAGGCATTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-474)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(119-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

53.293

100

0.561

Multiple sequence alignment