Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   I33_RS19210 Genome accession   NC_017195
Coordinates   3879080..3879769 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3874080..3884769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS19190 (I33_4131) yxeA 3874985..3875332 (-) 348 WP_014478474.1 YxeA family protein -
  I33_RS19195 (I33_4132) yxdM 3875346..3877214 (-) 1869 WP_014478475.1 ABC transporter permease YxdM -
  I33_RS19200 (I33_4133) yxdL 3877189..3877962 (-) 774 WP_014478476.1 ABC transporter ATP-binding protein YxdL -
  I33_RS19205 (I33_4134) yxdK 3878106..3879083 (-) 978 WP_014478477.1 two-component system sensor histidine kinase YxdK -
  I33_RS19210 (I33_4135) braR 3879080..3879769 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  I33_RS19215 (I33_4136) iolJ 3879877..3880749 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  I33_RS19220 (I33_4137) iolI 3880770..3881606 (-) 837 WP_014478479.1 2-keto-myo-inositol isomerase -
  I33_RS19225 (I33_4138) iolH 3881692..3882561 (-) 870 WP_014478480.1 sugar phosphate isomerase/epimerase -
  I33_RS19230 (I33_4139) iolG 3882581..3883615 (-) 1035 WP_014478481.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=36052 I33_RS19210 WP_003243527.1 3879080..3879769(-) (braR) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=36052 I33_RS19210 WP_003243527.1 3879080..3879769(-) (braR) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment