Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FAY30_RS17190 Genome accession   NZ_CP039727
Coordinates   3537888..3538640 (-) Length   250 a.a.
NCBI ID   WP_149871019.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 3532888..3543640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS17175 (FAY30_17175) - 3534364..3535173 (-) 810 WP_149871016.1 pyruvate, water dikinase regulatory protein -
  FAY30_RS17180 (FAY30_17180) - 3535209..3535838 (-) 630 WP_190284943.1 helix-turn-helix transcriptional regulator -
  FAY30_RS17185 (FAY30_17185) - 3536209..3537591 (-) 1383 WP_149871018.1 glycine--tRNA ligase -
  FAY30_RS17190 (FAY30_17190) recO 3537888..3538640 (-) 753 WP_149871019.1 DNA repair protein RecO Machinery gene
  FAY30_RS17195 (FAY30_17195) - 3538676..3538819 (-) 144 WP_149871020.1 YqzL family protein -
  FAY30_RS17200 (FAY30_17200) era 3538980..3539900 (-) 921 WP_149871021.1 GTPase Era -
  FAY30_RS17205 (FAY30_17205) - 3539890..3540291 (-) 402 WP_149871022.1 cytidine deaminase -
  FAY30_RS17210 (FAY30_17210) - 3540497..3540877 (-) 381 WP_411675458.1 diacylglycerol kinase family protein -
  FAY30_RS17215 (FAY30_17215) ybeY 3540855..3541271 (-) 417 WP_411675502.1 rRNA maturation RNase YbeY -
  FAY30_RS17220 (FAY30_17220) - 3541322..3543499 (-) 2178 WP_149871024.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28906.48 Da        Isoelectric Point: 8.4316

>NTDB_id=360466 FAY30_RS17190 WP_149871019.1 3537888..3538640(-) (recO) [Bacillus sp. S3]
MLQKCEGIVIRVNDYGETNKIVTLYTREWGKIGIMARGAKKPNSRLSSITQLFTHGYFLVQKGTGLGSLQQGEMITSMRS
IGEDIFLTAYASYIVELTDKCTDEKKPNPFHFELLYQTLNYMNEGYDPDILMHIYEMKMLNVMGLYPILNQCSVCGSTDG
HFSFSIREGGFICHRCLNQDPYHFKLSPATVKLLRLFYYFDLSRLGEISVKEKTKAELKKVITAYYEEYSGLHFKTKKFL
NSMDQFRNLF

Nucleotide


Download         Length: 753 bp        

>NTDB_id=360466 FAY30_RS17190 WP_149871019.1 3537888..3538640(-) (recO) [Bacillus sp. S3]
ATGCTTCAGAAATGTGAAGGCATTGTCATTAGAGTAAATGATTATGGTGAAACCAATAAAATTGTAACCTTATATACAAG
GGAATGGGGAAAGATCGGCATTATGGCACGAGGAGCTAAAAAGCCCAACAGCCGTCTTTCTTCCATTACCCAGCTTTTTA
CACATGGATATTTTCTAGTACAAAAAGGTACCGGTTTAGGGAGCTTGCAGCAGGGAGAAATGATTACCTCGATGCGTTCA
ATTGGCGAAGACATCTTTTTAACTGCCTATGCCAGTTATATTGTTGAATTAACCGATAAATGTACAGATGAAAAAAAACC
AAACCCGTTTCATTTTGAATTATTATATCAGACATTAAATTACATGAATGAAGGCTATGATCCGGATATTCTGATGCATA
TTTATGAAATGAAAATGTTAAATGTCATGGGATTATATCCAATCTTAAATCAATGTTCCGTTTGCGGCAGTACAGACGGA
CATTTTTCTTTTTCTATTCGCGAAGGCGGATTTATCTGCCACCGGTGCTTGAACCAAGATCCGTACCATTTTAAATTATC
ACCAGCTACAGTGAAATTATTACGATTATTTTATTATTTTGATCTTTCAAGGTTAGGCGAAATTTCTGTCAAAGAGAAAA
CGAAAGCAGAACTTAAAAAAGTCATAACCGCCTACTATGAAGAATATTCAGGACTTCATTTTAAAACAAAGAAATTTCTT
AATTCCATGGATCAATTTCGTAATCTCTTTTAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

65.462

99.6

0.652

Multiple sequence alignment