Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   GTW26_RS29675 Genome accession   NZ_CP047643
Coordinates   6289678..6290202 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa CI27     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6284678..6295202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW26_RS29660 (GTW26_29585) aroB 6285806..6286912 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  GTW26_RS29665 (GTW26_29590) aroK 6286962..6287480 (-) 519 WP_003095833.1 shikimate kinase AroK -
  GTW26_RS29670 (GTW26_29595) pilQ 6287492..6289624 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  GTW26_RS29675 (GTW26_29600) comL/pilP 6289678..6290202 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  GTW26_RS29680 (GTW26_29605) pilO 6290199..6290822 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  GTW26_RS29685 (GTW26_29610) pilN 6290819..6291415 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  GTW26_RS29690 (GTW26_29615) pilM 6291415..6292479 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  GTW26_RS29695 (GTW26_29620) - 6292664..6295135 (+) 2472 WP_003141786.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=360466 GTW26_RS29675 WP_003116136.1 6289678..6290202(-) (comL/pilP) [Pseudomonas aeruginosa CI27]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=360466 GTW26_RS29675 WP_003116136.1 6289678..6290202(-) (comL/pilP) [Pseudomonas aeruginosa CI27]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362

Multiple sequence alignment