Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   FAY30_RS15800 Genome accession   NZ_CP039727
Coordinates   3281422..3282033 (+) Length   203 a.a.
NCBI ID   WP_149870766.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3276422..3287033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS15770 (FAY30_15770) - 3277644..3278147 (+) 504 WP_317845665.1 Hsp20/alpha crystallin family protein -
  FAY30_RS15775 (FAY30_15775) - 3278210..3278761 (-) 552 WP_149870761.1 YppG family protein -
  FAY30_RS15780 (FAY30_15780) yppF 3278953..3279162 (+) 210 WP_149870762.1 YppF family protein -
  FAY30_RS15785 (FAY30_15785) - 3279197..3279553 (-) 357 WP_149870763.1 DUF1798 family protein -
  FAY30_RS15790 (FAY30_15790) - 3279625..3279909 (-) 285 WP_149870764.1 hypothetical protein -
  FAY30_RS15795 (FAY30_15795) - 3280253..3281230 (-) 978 WP_149870765.1 DUF2515 domain-containing protein -
  FAY30_RS15800 (FAY30_15800) recU 3281422..3282033 (+) 612 WP_149870766.1 Holliday junction resolvase RecU Machinery gene
  FAY30_RS15805 (FAY30_15805) - 3282051..3284651 (+) 2601 WP_149870767.1 PBP1A family penicillin-binding protein -
  FAY30_RS15810 (FAY30_15810) - 3284672..3285031 (-) 360 WP_149870768.1 YpoC family protein -
  FAY30_RS15815 (FAY30_15815) nth 3285024..3285686 (-) 663 WP_149870769.1 endonuclease III -
  FAY30_RS15820 (FAY30_15820) - 3285747..3286445 (-) 699 WP_149870770.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23768.21 Da        Isoelectric Point: 9.6371

>NTDB_id=360462 FAY30_RS15800 WP_149870766.1 3281422..3282033(+) (recU) [Bacillus sp. S3]
MTVNYPNGKKYKPKEREIKNTGKNKKNGSYSNRGMTLEEDLNETNEFYRERKIAVIHKKPTPVQIVQVDYPNRSAAVIKE
AYFKLASTTDYNGVYKGKYIDFEAKETQNPTSFPLKNFHPHQVEHMEEVMDQGGYCFVILRFTRFEQVYLLEAKHLLKYW
KRMMGGGRKSVTKAEIEQDGHYIPLGFQPRIDYIKIIDTLLEG

Nucleotide


Download         Length: 612 bp        

>NTDB_id=360462 FAY30_RS15800 WP_149870766.1 3281422..3282033(+) (recU) [Bacillus sp. S3]
ATGACTGTTAATTATCCAAATGGAAAAAAGTATAAGCCGAAGGAACGTGAAATTAAAAATACCGGAAAAAATAAAAAAAA
TGGCTCGTACAGCAATAGAGGTATGACACTTGAAGAAGATTTAAATGAAACAAATGAATTTTACCGTGAACGTAAAATTG
CAGTCATACATAAGAAGCCTACACCGGTACAAATCGTCCAGGTTGATTATCCAAATAGAAGTGCAGCCGTTATTAAAGAG
GCTTATTTTAAATTAGCTTCGACGACTGACTATAATGGGGTATACAAAGGTAAATATATTGATTTTGAAGCAAAGGAAAC
ACAAAACCCCACTTCTTTCCCATTAAAAAATTTCCATCCACACCAGGTGGAGCATATGGAAGAAGTAATGGATCAAGGAG
GATATTGCTTTGTTATTCTAAGGTTTACCAGATTTGAACAGGTATATCTACTTGAAGCTAAACACTTGTTAAAGTATTGG
AAAAGAATGATGGGCGGAGGCCGAAAATCGGTTACAAAAGCGGAAATTGAACAAGATGGTCATTACATTCCACTTGGATT
TCAACCAAGAATTGACTATATTAAAATAATAGATACACTTTTAGAAGGTTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(33-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.121

97.537

0.606

Multiple sequence alignment