Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   GTW26_RS25000 Genome accession   NZ_CP047643
Coordinates   5308382..5309824 (-) Length   480 a.a.
NCBI ID   WP_003141219.1    Uniprot ID   A0A0H2ZGF7
Organism   Pseudomonas aeruginosa CI27     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5303382..5314824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GTW26_RS24970 (GTW26_24925) - 5303708..5304823 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  GTW26_RS24975 (GTW26_24930) - 5304816..5305577 (+) 762 WP_003141218.1 DUF2334 domain-containing protein -
  GTW26_RS24980 (GTW26_24935) - 5305574..5306575 (+) 1002 WP_003120851.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  GTW26_RS24985 (GTW26_24940) - 5306550..5306762 (-) 213 WP_003115238.1 hypothetical protein -
  GTW26_RS24990 (GTW26_24945) purU 5306812..5307663 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  GTW26_RS24995 (GTW26_24950) mvaT 5307923..5308297 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  GTW26_RS25000 (GTW26_24955) sbcB 5308382..5309824 (-) 1443 WP_003141219.1 exodeoxyribonuclease I Machinery gene
  GTW26_RS25005 (GTW26_24960) - 5310049..5310786 (+) 738 WP_003101171.1 hypothetical protein -
  GTW26_RS25010 (GTW26_24965) - 5310824..5311621 (+) 798 WP_003134638.1 RDD family protein -
  GTW26_RS25015 (GTW26_24970) - 5311618..5312598 (+) 981 WP_003134640.1 stage II sporulation protein M -
  GTW26_RS25020 (GTW26_24975) - 5312585..5314156 (+) 1572 WP_003141220.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55477.76 Da        Isoelectric Point: 5.5542

>NTDB_id=360448 GTW26_RS25000 WP_003141219.1 5308382..5309824(-) (sbcB) [Pseudomonas aeruginosa CI27]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRGEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=360448 GTW26_RS25000 WP_003141219.1 5308382..5309824(-) (sbcB) [Pseudomonas aeruginosa CI27]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCACGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGGCAGGCCCACGACGCGCTTTCCGATGTTCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGTAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCTCTCATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGGCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(207-470)

Exonuclease (RNase_T)

(9-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.412

88.542

0.438