Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FAY30_RS02885 Genome accession   NZ_CP039727
Coordinates   620011..620961 (+) Length   316 a.a.
NCBI ID   WP_149868480.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 615011..625961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS02865 (FAY30_02865) - 615718..616743 (+) 1026 WP_223820873.1 DUF418 domain-containing protein -
  FAY30_RS02870 (FAY30_02870) - 617031..618392 (+) 1362 WP_149868477.1 arsenic transporter -
  FAY30_RS02875 (FAY30_02875) - 618423..619103 (+) 681 WP_149868478.1 DUF2642 domain-containing protein -
  FAY30_RS02880 (FAY30_02880) - 619313..619795 (-) 483 WP_149868479.1 hypothetical protein -
  FAY30_RS02885 (FAY30_02885) ceuB 620011..620961 (+) 951 WP_149868480.1 ABC transporter permease Machinery gene
  FAY30_RS02890 (FAY30_02890) - 620954..621904 (+) 951 WP_149868481.1 iron chelate uptake ABC transporter family permease subunit -
  FAY30_RS02895 (FAY30_02895) - 621901..622662 (+) 762 WP_149868482.1 ABC transporter ATP-binding protein -
  FAY30_RS02900 (FAY30_02900) - 622683..623642 (+) 960 WP_149868483.1 siderophore ABC transporter substrate-binding protein -
  FAY30_RS02905 (FAY30_02905) - 623858..625318 (+) 1461 WP_149868484.1 PAS domain S-box protein -
  FAY30_RS02910 (FAY30_02910) - 625387..625923 (-) 537 WP_149868485.1 ribonuclease H-like YkuK family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34593.67 Da        Isoelectric Point: 10.0069

>NTDB_id=360438 FAY30_RS02885 WP_149868480.1 620011..620961(+) (ceuB) [Bacillus sp. S3]
MKKRYLLLGLLILSAGSLFVGVSSLSPMDLLDFQSEETQIFLISRVPRLVAILLAGAGMSIAGLIMQQLSRNKFVSPTTA
GTLDATRLGILVSMLLFANASMLEKMAIAFVFALGGTFLFMQILDRIKFKDAIFIPLVGLMFGNILSSVTTFFAYRADVI
QNMSAWLQGDFSMIMKGRYELLYISIPILVIAYFYANRFTVAGMGEDFSKNLGLAYSRVVNIGLVLVALITATVVLTVGM
IPFLGLIIPNIISISKGDHLQKTLPHTALLGANFLLVCDILGRVIIFPYEISISLMVGVIGSGIFLYLLFRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=360438 FAY30_RS02885 WP_149868480.1 620011..620961(+) (ceuB) [Bacillus sp. S3]
ATGAAGAAACGATATTTACTATTGGGATTATTGATTTTATCTGCCGGTTCATTGTTTGTTGGGGTTAGCAGTCTTTCACC
AATGGATCTACTAGACTTTCAATCTGAAGAAACACAAATATTCCTGATCAGCCGGGTGCCGCGGCTTGTGGCGATTCTAC
TGGCAGGAGCGGGAATGAGCATTGCCGGTTTGATCATGCAGCAGCTTAGCCGCAATAAATTTGTCTCGCCGACAACGGCA
GGAACCCTGGATGCGACTCGTCTGGGAATCCTTGTTTCAATGTTGCTATTTGCCAACGCTTCAATGCTCGAAAAAATGGC
CATTGCCTTTGTATTCGCGCTTGGCGGAACGTTTTTGTTTATGCAAATTCTCGATCGAATCAAGTTCAAGGATGCCATTT
TCATTCCTCTTGTCGGGCTGATGTTTGGGAATATCTTATCCTCTGTCACGACATTTTTTGCCTATCGGGCAGATGTGATT
CAAAATATGTCGGCGTGGCTTCAAGGTGATTTTTCGATGATCATGAAAGGGCGGTATGAACTCTTATACATAAGTATTCC
GATATTAGTTATTGCCTATTTCTATGCCAACCGCTTTACCGTAGCCGGGATGGGGGAGGATTTTTCGAAAAATTTAGGTC
TTGCATACAGCAGGGTCGTTAACATAGGGCTTGTGCTTGTTGCATTAATTACGGCAACGGTCGTGTTAACGGTTGGGATG
ATCCCGTTCCTAGGTTTGATTATTCCGAATATCATCTCGATTTCTAAAGGAGATCATCTGCAAAAAACCTTGCCGCATAC
AGCTCTTCTGGGAGCGAACTTTCTGCTGGTTTGCGATATTTTAGGCCGGGTGATTATTTTCCCGTATGAAATTTCAATCA
GTCTCATGGTTGGCGTCATCGGCAGCGGGATTTTCCTCTATCTTCTATTTAGGAGGAAGGCTTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55

94.937

0.522

Multiple sequence alignment