Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   FAY30_RS00220 Genome accession   NZ_CP039727
Coordinates   42563..42847 (-) Length   94 a.a.
NCBI ID   WP_149868036.1    Uniprot ID   -
Organism   Bacillus sp. S3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 37563..47847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAY30_RS00185 (FAY30_00185) - 37590..37919 (+) 330 WP_149868030.1 cyclic-di-AMP receptor -
  FAY30_RS00190 (FAY30_00190) holB 37947..38954 (+) 1008 WP_149868031.1 DNA polymerase III subunit delta' -
  FAY30_RS00195 (FAY30_00195) - 38947..39774 (+) 828 WP_149868032.1 stage 0 sporulation family protein -
  FAY30_RS00200 (FAY30_00200) yabA 39787..40164 (+) 378 WP_149868033.1 DNA replication initiation control protein YabA -
  FAY30_RS00205 (FAY30_00205) - 40226..40966 (+) 741 WP_149868034.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  FAY30_RS00210 (FAY30_00210) - 40956..41261 (+) 306 WP_149868035.1 GIY-YIG nuclease family protein -
  FAY30_RS00215 (FAY30_00215) rsmI 41407..42282 (+) 876 WP_149872541.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  FAY30_RS00220 (FAY30_00220) abrB 42563..42847 (-) 285 WP_149868036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  FAY30_RS00225 (FAY30_00225) metG 43327..45279 (+) 1953 WP_149868037.1 methionine--tRNA ligase -
  FAY30_RS00230 (FAY30_00230) - 45400..46167 (+) 768 WP_149872542.1 TatD family hydrolase -
  FAY30_RS00235 (FAY30_00235) - 46405..47586 (+) 1182 WP_149868038.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10529.32 Da        Isoelectric Point: 5.2185

>NTDB_id=360435 FAY30_RS00220 WP_149868036.1 42563..42847(-) (abrB) [Bacillus sp. S3]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDERIILKKYKPNMTCQVTGEVSDDNMALAGGKLILSREGAE
LLIQEIQKNFEVAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=360435 FAY30_RS00220 WP_149868036.1 42563..42847(-) (abrB) [Bacillus sp. S3]
ATGAAATCTACAGGTATTGTTCGTAAGGTTGATGAATTAGGTCGTGTGGTTATTCCGATTGAATTAAGACGTACACTTGG
TATTGCAGAGAAGGATGCTCTAGAAATCTATGTGGATGATGAGCGCATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTCTCTGATGATAATATGGCTCTTGCTGGCGGAAAATTAATCCTAAGCCGTGAAGGTGCAGAA
TTATTGATCCAAGAAATTCAAAAAAACTTTGAAGTAGCGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

86.813

96.809

0.84

Multiple sequence alignment