Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   FBF59_RS27880 Genome accession   NZ_CP039721
Coordinates   5347036..5347470 (+) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus thuringiensis strain BT-59     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5342036..5352470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBF59_RS27860 (FBF59_27860) - 5342949..5344112 (-) 1164 WP_000434585.1 aminotransferase A -
  FBF59_RS27865 (FBF59_27865) - 5344234..5344434 (-) 201 WP_000929277.1 hypothetical protein -
  FBF59_RS27870 (FBF59_27870) kinB 5344745..5346019 (+) 1275 WP_000420367.1 sporulation sensor histidine kinase KinB -
  FBF59_RS27875 (FBF59_27875) - 5346058..5346807 (-) 750 WP_000388468.1 DUF3967 domain-containing protein -
  FBF59_RS27880 (FBF59_27880) nucA/comI 5347036..5347470 (+) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  FBF59_RS27885 (FBF59_27885) - 5347507..5347896 (+) 390 WP_000424022.1 competence protein ComJ -
  FBF59_RS27890 (FBF59_27890) metE 5347934..5350222 (-) 2289 WP_001007602.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FBF59_RS27895 (FBF59_27895) - 5350735..5351292 (-) 558 WP_000062064.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=360431 FBF59_RS27880 WP_000811494.1 5347036..5347470(+) (nucA/comI) [Bacillus thuringiensis strain BT-59]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=360431 FBF59_RS27880 WP_000811494.1 5347036..5347470(+) (nucA/comI) [Bacillus thuringiensis strain BT-59]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCATATCCTTCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGCGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549

Multiple sequence alignment