Detailed information NTG0360404

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: GTW26_RS07660
• Genome accession: NZ_CP047643
• Coordinates: 1594763..1595767 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa CI27
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1589763..1600767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GTW26_RS07630 (GTW26_07610)	fghA	1589855..1590706 (+)	852	WP_003138034.1	S-formylglutathione hydrolase	-
GTW26_RS07635 (GTW26_07615)	ispF	1590777..1591250 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
GTW26_RS07640 (GTW26_07620)	truD	1591247..1592314 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
GTW26_RS07645 (GTW26_07625)	surE	1592302..1593051 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
GTW26_RS07650 (GTW26_07630)	-	1593084..1593719 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
GTW26_RS07655 (GTW26_07635)	-	1593765..1594658 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
GTW26_RS07660 (GTW26_07640)	rpoS	1594763..1595767 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
GTW26_RS07665 (GTW26_07645)	fdxA	1596193..1596516 (-)	324	WP_003092272.1	ferredoxin FdxA	-
GTW26_RS07670 (GTW26_07650)	mutS	1596583..1599150 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
GTW26_RS07675 (GTW26_07655)	-	1599276..1600283 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=360404 GTW26_RS07660 WP_003113871.1 1594763..1595767(+) (rpoS) [Pseudomonas aeruginosa CI27]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=360404 GTW26_RS07660 WP_003113871.1 1594763..1595767(+) (rpoS) [Pseudomonas aeruginosa CI27]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653